173 related articles for article (PubMed ID: 29594767)
21. Improved prediction of critical residues for protein function based on network and phylogenetic analyses.
Thibert B; Bredesen DE; del Rio G
BMC Bioinformatics; 2005 Aug; 6():213. PubMed ID: 16124876
[TBL] [Abstract][Full Text] [Related]
22. Automated structure-based prediction of functional sites in proteins: applications to assessing the validity of inheriting protein function from homology in genome annotation and to protein docking.
Aloy P; Querol E; Aviles FX; Sternberg MJ
J Mol Biol; 2001 Aug; 311(2):395-408. PubMed ID: 11478868
[TBL] [Abstract][Full Text] [Related]
23. Prediction of amino acid positions specific for functional groups in a protein family based on local sequence similarity.
Karasev DA; Veselovsky AV; Oparina NY; Filimonov DA; Sobolev BN
J Mol Recognit; 2016 Apr; 29(4):159-69. PubMed ID: 26549790
[TBL] [Abstract][Full Text] [Related]
24. An Evolutionary Trace method defines functionally important bases and sites common to RNA families.
Novikov IB; Wilkins AD; Lichtarge O
PLoS Comput Biol; 2020 Mar; 16(3):e1007583. PubMed ID: 32208421
[TBL] [Abstract][Full Text] [Related]
25. ConSurf: identification of functional regions in proteins by surface-mapping of phylogenetic information.
Glaser F; Pupko T; Paz I; Bell RE; Bechor-Shental D; Martz E; Ben-Tal N
Bioinformatics; 2003 Jan; 19(1):163-4. PubMed ID: 12499312
[TBL] [Abstract][Full Text] [Related]
26. Topology improves phylogenetic motif functional site predictions.
Kc DB; Livesay DR
IEEE/ACM Trans Comput Biol Bioinform; 2011; 8(1):226-33. PubMed ID: 21071810
[TBL] [Abstract][Full Text] [Related]
27. PROMALS web server for accurate multiple protein sequence alignments.
Pei J; Kim BH; Tang M; Grishin NV
Nucleic Acids Res; 2007 Jul; 35(Web Server issue):W649-52. PubMed ID: 17452345
[TBL] [Abstract][Full Text] [Related]
28. Protein meta-functional signatures from combining sequence, structure, evolution, and amino acid property information.
Wang K; Horst JA; Cheng G; Nickle DC; Samudrala R
PLoS Comput Biol; 2008 Sep; 4(9):e1000181. PubMed ID: 18818722
[TBL] [Abstract][Full Text] [Related]
29. Combining specificity determining and conserved residues improves functional site prediction.
Kalinina OV; Gelfand MS; Russell RB
BMC Bioinformatics; 2009 Jun; 10():174. PubMed ID: 19508719
[TBL] [Abstract][Full Text] [Related]
30. Are residues in a protein folding nucleus evolutionarily conserved?
Tseng YY; Liang J
J Mol Biol; 2004 Jan; 335(4):869-80. PubMed ID: 14698285
[TBL] [Abstract][Full Text] [Related]
31. A practical guide for the computational selection of residues to be experimentally characterized in protein families.
Benítez-Páez A; Cárdenas-Brito S; Gutiérrez AJ
Brief Bioinform; 2012 May; 13(3):329-36. PubMed ID: 21930656
[TBL] [Abstract][Full Text] [Related]
32. Variation in structural location and amino acid conservation of functional sites in protein domain families.
Pils B; Copley RR; Schultz J
BMC Bioinformatics; 2005 Aug; 6():210. PubMed ID: 16122386
[TBL] [Abstract][Full Text] [Related]
33. ConSurf: an algorithmic tool for the identification of functional regions in proteins by surface mapping of phylogenetic information.
Armon A; Graur D; Ben-Tal N
J Mol Biol; 2001 Mar; 307(1):447-63. PubMed ID: 11243830
[TBL] [Abstract][Full Text] [Related]
34. Incorporating Nearest-Neighbor Site Dependence into Protein Evolution Models.
Larson G; Thorne JL; Schmidler S
J Comput Biol; 2020 Mar; 27(3):361-375. PubMed ID: 32053390
[No Abstract] [Full Text] [Related]
35. An analysis approach to identify specific functional sites in orthologous proteins using sequence and structural information: application to neuroserpin reveals regions that differentially regulate inhibitory activity.
Lee TW; Yang AS; Brittain T; Birch NP
Proteins; 2015 Jan; 83(1):135-52. PubMed ID: 25363759
[TBL] [Abstract][Full Text] [Related]
36. A novel method for protein-protein interaction site prediction using phylogenetic substitution models.
La D; Kihara D
Proteins; 2012 Jan; 80(1):126-41. PubMed ID: 21989996
[TBL] [Abstract][Full Text] [Related]
37. Biological networks: comparison, conservation, and evolution via relative description length.
Chor B; Tuller T
J Comput Biol; 2007; 14(6):817-38. PubMed ID: 17691896
[TBL] [Abstract][Full Text] [Related]
38. FRalanyzer: a tool for functional analysis of fold-recognition sequence-structure alignments.
Saini HK; Fischer D
Nucleic Acids Res; 2007 Jul; 35(Web Server issue):W499-502. PubMed ID: 17537819
[TBL] [Abstract][Full Text] [Related]
39. Protein-protein interactions leave evolutionary footprints: High molecular coevolution at the core of interfaces.
Teppa E; Zea DJ; Marino-Buslje C
Protein Sci; 2017 Dec; 26(12):2438-2444. PubMed ID: 28980349
[TBL] [Abstract][Full Text] [Related]
40. Sequence harmony: detecting functional specificity from alignments.
Feenstra KA; Pirovano W; Krab K; Heringa J
Nucleic Acids Res; 2007 Jul; 35(Web Server issue):W495-8. PubMed ID: 17584793
[TBL] [Abstract][Full Text] [Related]
[Previous] [Next] [New Search]
