240 related articles for article (PubMed ID: 29610334)
1. Impact of the tree prior on estimating clock rates during epidemic outbreaks.
Möller S; du Plessis L; Stadler T
Proc Natl Acad Sci U S A; 2018 Apr; 115(16):4200-4205. PubMed ID: 29610334
[TBL] [Abstract][Full Text] [Related]
2. Quantifying the epidemic spread of Ebola virus (EBOV) in Sierra Leone using phylodynamics.
Alizon S; Lion S; Murall CL; Abbate JL
Virulence; 2014; 5(8):825-7. PubMed ID: 25495064
[TBL] [Abstract][Full Text] [Related]
3. Phylodynamic Inference across Epidemic Scales.
Volz EM; Romero-Severson E; Leitner T
Mol Biol Evol; 2017 May; 34(5):1276-1288. PubMed ID: 28204593
[TBL] [Abstract][Full Text] [Related]
4. The choice of tree prior and molecular clock does not substantially affect phylogenetic inferences of diversification rates.
Sarver BAJ; Pennell MW; Brown JW; Keeble S; Hardwick KM; Sullivan J; Harmon LJ
PeerJ; 2019; 7():e6334. PubMed ID: 30886768
[TBL] [Abstract][Full Text] [Related]
5. Bayesian inference in an extended SEIR model with nonparametric disease transmission rate: an application to the Ebola epidemic in Sierra Leone.
Frasso G; Lambert P
Biostatistics; 2016 Oct; 17(4):779-92. PubMed ID: 27324411
[TBL] [Abstract][Full Text] [Related]
6. The impact of calibration and clock-model choice on molecular estimates of divergence times.
Duchêne S; Lanfear R; Ho SY
Mol Phylogenet Evol; 2014 Sep; 78():277-89. PubMed ID: 24910154
[TBL] [Abstract][Full Text] [Related]
7. Molecular-clock methods for estimating evolutionary rates and timescales.
Ho SY; Duchêne S
Mol Ecol; 2014 Dec; 23(24):5947-65. PubMed ID: 25290107
[TBL] [Abstract][Full Text] [Related]
8. Bayesian Molecular Clock Dating Using Genome-Scale Datasets.
Dos Reis M; Yang Z
Methods Mol Biol; 2019; 1910():309-330. PubMed ID: 31278669
[TBL] [Abstract][Full Text] [Related]
9. The Past Sure is Tense: On Interpreting Phylogenetic Divergence Time Estimates.
Brown JW; Smith SA
Syst Biol; 2018 Mar; 67(2):340-353. PubMed ID: 28945912
[TBL] [Abstract][Full Text] [Related]
10. Inferring demographic parameters in bacterial genomic data using Bayesian and hybrid phylogenetic methods.
Duchene S; Duchene DA; Geoghegan JL; Dyson ZA; Hawkey J; Holt KE
BMC Evol Biol; 2018 Jun; 18(1):95. PubMed ID: 29914372
[TBL] [Abstract][Full Text] [Related]
11. Calibrated birth-death phylogenetic time-tree priors for bayesian inference.
Heled J; Drummond AJ
Syst Biol; 2015 May; 64(3):369-83. PubMed ID: 25398445
[TBL] [Abstract][Full Text] [Related]
12. Getting to the root of epidemic spread with phylodynamic analysis of genomic data.
du Plessis L; Stadler T
Trends Microbiol; 2015 Jul; 23(7):383-6. PubMed ID: 26139467
[TBL] [Abstract][Full Text] [Related]
13. Cross-validation to select Bayesian hierarchical models in phylogenetics.
Duchêne S; Duchêne DA; Di Giallonardo F; Eden JS; Geoghegan JL; Holt KE; Ho SY; Holmes EC
BMC Evol Biol; 2016 May; 16(1):115. PubMed ID: 27230264
[TBL] [Abstract][Full Text] [Related]
14. Inferring epidemiological parameters from phylogenies using regression-ABC: A comparative study.
Saulnier E; Gascuel O; Alizon S
PLoS Comput Biol; 2017 Mar; 13(3):e1005416. PubMed ID: 28263987
[TBL] [Abstract][Full Text] [Related]
15. Testing a molecular clock without an outgroup: derivations of induced priors on branch-length restrictions in a Bayesian framework.
Suchard MA; Weiss RE; Sinsheimer JS
Syst Biol; 2003 Feb; 52(1):48-54. PubMed ID: 12554439
[TBL] [Abstract][Full Text] [Related]
16. Accuracy of rate estimation using relaxed-clock models with a critical focus on the early metazoan radiation.
Ho SY; Phillips MJ; Drummond AJ; Cooper A
Mol Biol Evol; 2005 May; 22(5):1355-63. PubMed ID: 15758207
[TBL] [Abstract][Full Text] [Related]
17. Molecular dating for phylogenies containing a mix of populations and species by using Bayesian and RelTime approaches.
Mello B; Tao Q; Barba-Montoya J; Kumar S
Mol Ecol Resour; 2021 Jan; 21(1):122-136. PubMed ID: 32881388
[TBL] [Abstract][Full Text] [Related]
18. Tree imbalance causes a bias in phylogenetic estimation of evolutionary timescales using heterochronous sequences.
Duchêne D; Duchêne S; Ho SY
Mol Ecol Resour; 2015 Jul; 15(4):785-94. PubMed ID: 25431227
[TBL] [Abstract][Full Text] [Related]
19. Estimating Epidemic Incidence and Prevalence from Genomic Data.
Vaughan TG; Leventhal GE; Rasmussen DA; Drummond AJ; Welch D; Stadler T
Mol Biol Evol; 2019 Aug; 36(8):1804-1816. PubMed ID: 31058982
[TBL] [Abstract][Full Text] [Related]
20. Sphenodontian phylogeny and the impact of model choice in Bayesian morphological clock estimates of divergence times and evolutionary rates.
Simões TR; Caldwell MW; Pierce SE
BMC Biol; 2020 Dec; 18(1):191. PubMed ID: 33287835
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
