These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

314 related articles for article (PubMed ID: 29617939)

  • 1. FaStore: a space-saving solution for raw sequencing data.
    Roguski L; Ochoa I; Hernaez M; Deorowicz S
    Bioinformatics; 2018 Aug; 34(16):2748-2756. PubMed ID: 29617939
    [TBL] [Abstract][Full Text] [Related]  

  • 2. CALQ: compression of quality values of aligned sequencing data.
    Voges J; Ostermann J; Hernaez M
    Bioinformatics; 2018 May; 34(10):1650-1658. PubMed ID: 29186284
    [TBL] [Abstract][Full Text] [Related]  

  • 3. SPRING: a next-generation compressor for FASTQ data.
    Chandak S; Tatwawadi K; Ochoa I; Hernaez M; Weissman T
    Bioinformatics; 2019 Aug; 35(15):2674-2676. PubMed ID: 30535063
    [TBL] [Abstract][Full Text] [Related]  

  • 4. ChIPWig: a random access-enabling lossless and lossy compression method for ChIP-seq data.
    Ravanmehr V; Kim M; Wang Z; Milenkovic O
    Bioinformatics; 2018 Mar; 34(6):911-919. PubMed ID: 29087447
    [TBL] [Abstract][Full Text] [Related]  

  • 5. LFQC: a lossless compression algorithm for FASTQ files.
    Nicolae M; Pathak S; Rajasekaran S
    Bioinformatics; 2015 Oct; 31(20):3276-81. PubMed ID: 26093148
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Compression of genomic sequencing reads via hash-based reordering: algorithm and analysis.
    Chandak S; Tatwawadi K; Weissman T
    Bioinformatics; 2018 Feb; 34(4):558-567. PubMed ID: 29444237
    [TBL] [Abstract][Full Text] [Related]  

  • 7. QVZ: lossy compression of quality values.
    Malysa G; Hernaez M; Ochoa I; Rao M; Ganesan K; Weissman T
    Bioinformatics; 2015 Oct; 31(19):3122-9. PubMed ID: 26026138
    [TBL] [Abstract][Full Text] [Related]  

  • 8. mspack: efficient lossless and lossy mass spectrometry data compression.
    Hanau F; Röst H; Ochoa I
    Bioinformatics; 2021 Nov; 37(21):3923-3925. PubMed ID: 34478503
    [TBL] [Abstract][Full Text] [Related]  

  • 9. CSAM: Compressed SAM format.
    Cánovas R; Moffat A; Turpin A
    Bioinformatics; 2016 Dec; 32(24):3709-3716. PubMed ID: 27540265
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Lossy compression of quality scores in genomic data.
    Cánovas R; Moffat A; Turpin A
    Bioinformatics; 2014 Aug; 30(15):2130-6. PubMed ID: 24728856
    [TBL] [Abstract][Full Text] [Related]  

  • 11. iDoComp: a compression scheme for assembled genomes.
    Ochoa I; Hernaez M; Weissman T
    Bioinformatics; 2015 Mar; 31(5):626-33. PubMed ID: 25344501
    [TBL] [Abstract][Full Text] [Related]  

  • 12. PQSDC: a parallel lossless compressor for quality scores data via sequences partition and run-length prediction mapping.
    Sun H; Zheng Y; Xie H; Ma H; Zhong C; Yan M; Liu X; Wang G
    Bioinformatics; 2024 May; 40(5):. PubMed ID: 38759114
    [TBL] [Abstract][Full Text] [Related]  

  • 13. RENANO: a REference-based compressor for NANOpore FASTQ files.
    Dufort Y Álvarez G; Seroussi G; Smircich P; Sotelo-Silveira J; Ochoa I; Martín Á
    Bioinformatics; 2021 Dec; 37(24):4862-4864. PubMed ID: 34128963
    [TBL] [Abstract][Full Text] [Related]  

  • 14. ScaleQC: a scalable lossy to lossless solution for NGS data compression.
    Yu R; Yang W
    Bioinformatics; 2020 Nov; 36(17):4551-4559. PubMed ID: 32458976
    [TBL] [Abstract][Full Text] [Related]  

  • 15. CIndex: compressed indexes for fast retrieval of FASTQ files.
    Huo H; Liu P; Wang C; Jiang H; Vitter JS
    Bioinformatics; 2022 Jan; 38(2):335-343. PubMed ID: 34524416
    [TBL] [Abstract][Full Text] [Related]  

  • 16. FastqCLS: a FASTQ compressor for long-read sequencing via read reordering using a novel scoring model.
    Lee D; Song G
    Bioinformatics; 2022 Jan; 38(2):351-356. PubMed ID: 34623374
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Performance evaluation of lossy quality compression algorithms for RNA-seq data.
    Yu R; Yang W; Wang S
    BMC Bioinformatics; 2020 Jul; 21(1):321. PubMed ID: 32689929
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Compression of next-generation sequencing quality scores using memetic algorithm.
    Zhou J; Ji Z; Zhu Z; He S
    BMC Bioinformatics; 2014; 15 Suppl 15(Suppl 15):S10. PubMed ID: 25474747
    [TBL] [Abstract][Full Text] [Related]  

  • 19. AQUa: an adaptive framework for compression of sequencing quality scores with random access functionality.
    Paridaens T; Van Wallendael G; De Neve W; Lambert P
    Bioinformatics; 2018 Feb; 34(3):425-433. PubMed ID: 29028894
    [TBL] [Abstract][Full Text] [Related]  

  • 20. METHCOMP: a special purpose compression platform for DNA methylation data.
    Peng J; Milenkovic O; Ochoa I
    Bioinformatics; 2018 Aug; 34(15):2654-2656. PubMed ID: 29528370
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 16.