These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.
218 related articles for article (PubMed ID: 29642840)
1. iSeg: an efficient algorithm for segmentation of genomic and epigenomic data. Girimurugan SB; Liu Y; Lung PY; Vera DL; Dennis JH; Bass HW; Zhang J BMC Bioinformatics; 2018 Apr; 19(1):131. PubMed ID: 29642840 [TBL] [Abstract][Full Text] [Related]
2. Hierarchical discovery of large-scale and focal copy number alterations in low-coverage cancer genomes. Khalil AIS; Khyriem C; Chattopadhyay A; Sanyal A BMC Bioinformatics; 2020 Apr; 21(1):147. PubMed ID: 32299346 [TBL] [Abstract][Full Text] [Related]
3. MethCNA: a database for integrating genomic and epigenomic data in human cancer. Deng G; Yang J; Zhang Q; Xiao ZX; Cai H BMC Genomics; 2018 Feb; 19(1):138. PubMed ID: 29433427 [TBL] [Abstract][Full Text] [Related]
4. DBS: a fast and informative segmentation algorithm for DNA copy number analysis. Ruan J; Liu Z; Sun M; Wang Y; Yue J; Yu G BMC Bioinformatics; 2019 Jan; 20(1):1. PubMed ID: 30606105 [TBL] [Abstract][Full Text] [Related]
5. SLMSuite: a suite of algorithms for segmenting genomic profiles. Orlandini V; Provenzano A; Giglio S; Magi A BMC Bioinformatics; 2017 Jun; 18(1):321. PubMed ID: 28659129 [TBL] [Abstract][Full Text] [Related]
6. biomvRhsmm: genomic segmentation with hidden semi-Markov model. Du Y; Murani E; Ponsuksili S; Wimmers K Biomed Res Int; 2014; 2014():910390. PubMed ID: 24995333 [TBL] [Abstract][Full Text] [Related]
7. A comparison study: applying segmentation to array CGH data for downstream analyses. Willenbrock H; Fridlyand J Bioinformatics; 2005 Nov; 21(22):4084-91. PubMed ID: 16159913 [TBL] [Abstract][Full Text] [Related]
8. Large-scale genomic prediction using singular value decomposition of the genotype matrix. Ødegård J; Indahl U; Strandén I; Meuwissen THE Genet Sel Evol; 2018 Feb; 50(1):6. PubMed ID: 29490611 [TBL] [Abstract][Full Text] [Related]
9. GUIDEseq: a bioconductor package to analyze GUIDE-Seq datasets for CRISPR-Cas nucleases. Zhu LJ; Lawrence M; Gupta A; Pagès H; Kucukural A; Garber M; Wolfe SA BMC Genomics; 2017 May; 18(1):379. PubMed ID: 28506212 [TBL] [Abstract][Full Text] [Related]
10. An Entropy-Regularized Framework for Detecting Copy Number Variants. Mohammadi M; Farahi F IEEE Trans Biomed Eng; 2019 Mar; 66(3):682-688. PubMed ID: 29993514 [TBL] [Abstract][Full Text] [Related]
11. EpiAlignment: alignment with both DNA sequence and epigenomic data. Lu J; Cao X; Zhong S Nucleic Acids Res; 2019 Jul; 47(W1):W11-W19. PubMed ID: 31114924 [TBL] [Abstract][Full Text] [Related]
12. Inferring single-cell copy number profiles through cross-cell segmentation of read counts. Liu F; Shi F; Yu Z BMC Genomics; 2024 Jan; 25(1):25. PubMed ID: 38166601 [TBL] [Abstract][Full Text] [Related]
13. A statistical approach for array CGH data analysis. Picard F; Robin S; Lavielle M; Vaisse C; Daudin JJ BMC Bioinformatics; 2005 Feb; 6():27. PubMed ID: 15705208 [TBL] [Abstract][Full Text] [Related]
14. CNAViz: An interactive webtool for user-guided segmentation of tumor DNA sequencing data. Lalani Z; Chu G; Hsu S; Kagawa S; Xiang M; Zaccaria S; El-Kebir M PLoS Comput Biol; 2022 Oct; 18(10):e1010614. PubMed ID: 36228003 [TBL] [Abstract][Full Text] [Related]
15. A systematic comparison of copy number alterations in four types of female cancer. Kaveh F; Baumbusch LO; Nebdal D; Børresen-Dale AL; Lingjærde OC; Edvardsen H; Kristensen VN; Solvang HK BMC Cancer; 2016 Nov; 16(1):913. PubMed ID: 27876019 [TBL] [Abstract][Full Text] [Related]
16. A segmentation/clustering model for the analysis of array CGH data. Picard F; Robin S; Lebarbier E; Daudin JJ Biometrics; 2007 Sep; 63(3):758-66. PubMed ID: 17825008 [TBL] [Abstract][Full Text] [Related]
17. Medical image segmentation using analysis of isolable-contour maps. Shiffman S; Rubin GD; Napel S IEEE Trans Med Imaging; 2000 Nov; 19(11):1064-74. PubMed ID: 11204844 [TBL] [Abstract][Full Text] [Related]
18. COKGEN: a software for the identification of rare copy number variation from SNP microarrays. Yavaş G; Koyutürk M; Ozsoyoğlu M; Gould MP; Laframboise T Pac Symp Biocomput; 2010; ():371-82. PubMed ID: 19908389 [TBL] [Abstract][Full Text] [Related]
19. Simple binary segmentation frameworks for identifying variation in DNA copy number. Yang TY BMC Bioinformatics; 2012 Oct; 13():277. PubMed ID: 23107320 [TBL] [Abstract][Full Text] [Related]
20. Sequential model selection-based segmentation to detect DNA copy number variation. Hu J; Zhang L; Wang HJ Biometrics; 2016 Sep; 72(3):815-26. PubMed ID: 26954760 [TBL] [Abstract][Full Text] [Related] [Next] [New Search]