These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.
214 related articles for article (PubMed ID: 29659703)
1. B-cell receptor reconstruction from single-cell RNA-seq with VDJPuzzle. Rizzetto S; Koppstein DNP; Samir J; Singh M; Reed JH; Cai CH; Lloyd AR; Eltahla AA; Goodnow CC; Luciani F Bioinformatics; 2018 Aug; 34(16):2846-2847. PubMed ID: 29659703 [TBL] [Abstract][Full Text] [Related]
2. BASIC: BCR assembly from single cells. Canzar S; Neu KE; Tang Q; Wilson PC; Khan AA Bioinformatics; 2017 Feb; 33(3):425-427. PubMed ID: 28172415 [TBL] [Abstract][Full Text] [Related]
3. Assembly-based inference of B-cell receptor repertoires from short read RNA sequencing data with V'DJer. Mose LE; Selitsky SR; Bixby LM; Marron DL; Iglesia MD; Serody JS; Perou CM; Vincent BG; Parker JS Bioinformatics; 2016 Dec; 32(24):3729-3734. PubMed ID: 27559159 [TBL] [Abstract][Full Text] [Related]
4. Global characterization of B cell receptor repertoire in COVID-19 patients by single-cell V(D)J sequencing. Jin X; Zhou W; Luo M; Wang P; Xu Z; Ma K; Cao H; Xu C; Huang Y; Cheng R; Xiao L; Lin X; Pang F; Li Y; Nie H; Jiang Q Brief Bioinform; 2021 Nov; 22(6):. PubMed ID: 34015809 [TBL] [Abstract][Full Text] [Related]
5. FB5P-seq: FACS-Based 5-Prime End Single-Cell RNA-seq for Integrative Analysis of Transcriptome and Antigen Receptor Repertoire in B and T Cells. Attaf N; Cervera-Marzal I; Dong C; Gil L; Renand A; Spinelli L; Milpied P Front Immunol; 2020; 11():216. PubMed ID: 32194545 [TBL] [Abstract][Full Text] [Related]
6. Reconstructing B-cell receptor sequences from short-read single-cell RNA sequencing with BRAPeS. Afik S; Raulet G; Yosef N Life Sci Alliance; 2019 Aug; 2(4):. PubMed ID: 31451449 [TBL] [Abstract][Full Text] [Related]
8. TRUST4: immune repertoire reconstruction from bulk and single-cell RNA-seq data. Song L; Cohen D; Ouyang Z; Cao Y; Hu X; Liu XS Nat Methods; 2021 Jun; 18(6):627-630. PubMed ID: 33986545 [TBL] [Abstract][Full Text] [Related]
9. Systematic evaluation of B-cell clonal family inference approaches. Balashova D; van Schaik BDC; Stratigopoulou M; Guikema JEJ; Caniels TG; Claireaux M; van Gils MJ; Musters A; Anang DC; de Vries N; Greiff V; van Kampen AHC BMC Immunol; 2024 Feb; 25(1):13. PubMed ID: 38331731 [TBL] [Abstract][Full Text] [Related]
10. Somatic hypermutation analysis for improved identification of B cell clonal families from next-generation sequencing data. Nouri N; Kleinstein SH PLoS Comput Biol; 2020 Jun; 16(6):e1007977. PubMed ID: 32574157 [TBL] [Abstract][Full Text] [Related]
11. BRILIA: Integrated Tool for High-Throughput Annotation and Lineage Tree Assembly of B-Cell Repertoires. Lee DW; Khavrutskii IV; Wallqvist A; Bavari S; Cooper CL; Chaudhury S Front Immunol; 2016; 7():681. PubMed ID: 28144239 [TBL] [Abstract][Full Text] [Related]
12. CRIS: complete reconstruction of immunoglobulin Islam R; Bilenky M; Weng AP; Connors JM; Hirst M Bioinform Adv; 2021; 1(1):vbab021. PubMed ID: 34806017 [TBL] [Abstract][Full Text] [Related]
13. IMonitor: A Robust Pipeline for TCR and BCR Repertoire Analysis. Zhang W; Du Y; Su Z; Wang C; Zeng X; Zhang R; Hong X; Nie C; Wu J; Cao H; Xu X; Liu X Genetics; 2015 Oct; 201(2):459-72. PubMed ID: 26297338 [TBL] [Abstract][Full Text] [Related]
14. Immunoglobulin transcript sequence and somatic hypermutation computation from unselected RNA-seq reads in chronic lymphocytic leukemia. Blachly JS; Ruppert AS; Zhao W; Long S; Flynn J; Flinn I; Jones J; Maddocks K; Andritsos L; Ghia EM; Rassenti LZ; Kipps TJ; de la Chapelle A; Byrd JC Proc Natl Acad Sci U S A; 2015 Apr; 112(14):4322-7. PubMed ID: 25787252 [TBL] [Abstract][Full Text] [Related]
15. Antigen Receptor Galaxy: A User-Friendly, Web-Based Tool for Analysis and Visualization of T and B Cell Receptor Repertoire Data. IJspeert H; van Schouwenburg PA; van Zessen D; Pico-Knijnenburg I; Stubbs AP; van der Burg M J Immunol; 2017 May; 198(10):4156-4165. PubMed ID: 28416602 [TBL] [Abstract][Full Text] [Related]
16. B cell phylogenetics in the single cell era. Hoehn KB; Kleinstein SH Trends Immunol; 2024 Jan; 45(1):62-74. PubMed ID: 38151443 [TBL] [Abstract][Full Text] [Related]