BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

471 related articles for article (PubMed ID: 29659724)

  • 1. Efficient population-scale variant analysis and prioritization with VAPr.
    Birmingham A; Mark AM; Mazzaferro C; Xu G; Fisch KM
    Bioinformatics; 2018 Aug; 34(16):2843-2845. PubMed ID: 29659724
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Simulating Illumina metagenomic data with InSilicoSeq.
    Gourlé H; Karlsson-Lindsjö O; Hayer J; Bongcam-Rudloff E
    Bioinformatics; 2019 Feb; 35(3):521-522. PubMed ID: 30016412
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Interactive network visualization in Jupyter notebooks: visJS2jupyter.
    Rosenthal SB; Len J; Webster M; Gary A; Birmingham A; Fisch KM
    Bioinformatics; 2018 Jan; 34(1):126-128. PubMed ID: 28968701
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Gos: a declarative library for interactive genomics visualization in Python.
    Manz T; L'Yi S; Gehlenborg N
    Bioinformatics; 2023 Jan; 39(1):. PubMed ID: 36688709
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Goldilocks: a tool for identifying genomic regions that are 'just right'.
    Nicholls SM; Clare A; Randall JC
    Bioinformatics; 2016 Jul; 32(13):2047-9. PubMed ID: 27153673
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Pygenprop: a Python library for programmatic exploration and comparison of organism genome properties.
    Bergstrand LH; Neufeld JD; Doxey AC
    Bioinformatics; 2019 Dec; 35(23):5063-5065. PubMed ID: 31240307
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Analysing high-throughput sequencing data in Python with HTSeq 2.0.
    Putri GH; Anders S; Pyl PT; Pimanda JE; Zanini F
    Bioinformatics; 2022 May; 38(10):2943-2945. PubMed ID: 35561197
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Pybedtools: a flexible Python library for manipulating genomic datasets and annotations.
    Dale RK; Pedersen BS; Quinlan AR
    Bioinformatics; 2011 Dec; 27(24):3423-4. PubMed ID: 21949271
    [TBL] [Abstract][Full Text] [Related]  

  • 9. PyIOmica: longitudinal omics analysis and trend identification.
    Domanskyi S; Piermarocchi C; Mias GI
    Bioinformatics; 2020 Apr; 36(7):2306-2307. PubMed ID: 31778155
    [TBL] [Abstract][Full Text] [Related]  

  • 10. PERF: an exhaustive algorithm for ultra-fast and efficient identification of microsatellites from large DNA sequences.
    Avvaru AK; Sowpati DT; Mishra RK
    Bioinformatics; 2018 Mar; 34(6):943-948. PubMed ID: 29121165
    [TBL] [Abstract][Full Text] [Related]  

  • 11. A Python package for parsing, validating, mapping and formatting sequence variants using HGVS nomenclature.
    Hart RK; Rico R; Hare E; Garcia J; Westbrook J; Fusaro VA
    Bioinformatics; 2015 Jan; 31(2):268-70. PubMed ID: 25273102
    [TBL] [Abstract][Full Text] [Related]  

  • 12. SnapperDB: a database solution for routine sequencing analysis of bacterial isolates.
    Dallman T; Ashton P; Schafer U; Jironkin A; Painset A; Shaaban S; Hartman H; Myers R; Underwood A; Jenkins C; Grant K
    Bioinformatics; 2018 Sep; 34(17):3028-3029. PubMed ID: 29659710
    [TBL] [Abstract][Full Text] [Related]  

  • 13. JBrowse Jupyter: a Python interface to JBrowse 2.
    De Jesus Martinez T; Hershberg EA; Guo E; Stevens GJ; Diesh C; Xie P; Bridge C; Cain S; Haw R; Buels RM; Stein LD; Holmes IH
    Bioinformatics; 2023 Jan; 39(1):. PubMed ID: 36648320
    [TBL] [Abstract][Full Text] [Related]  

  • 14. FILTUS: a desktop GUI for fast and efficient detection of disease-causing variants, including a novel autozygosity detector.
    Vigeland MD; Gjøtterud KS; Selmer KK
    Bioinformatics; 2016 May; 32(10):1592-4. PubMed ID: 26819469
    [TBL] [Abstract][Full Text] [Related]  

  • 15. PyRanges: efficient comparison of genomic intervals in Python.
    Stovner EB; Sætrom P
    Bioinformatics; 2020 Feb; 36(3):918-919. PubMed ID: 31373614
    [TBL] [Abstract][Full Text] [Related]  

  • 16. NGLview-interactive molecular graphics for Jupyter notebooks.
    Nguyen H; Case DA; Rose AS
    Bioinformatics; 2018 Apr; 34(7):1241-1242. PubMed ID: 29236954
    [TBL] [Abstract][Full Text] [Related]  

  • 17. SIMBSIG: similarity search and clustering for biobank-scale data.
    Adamer MF; Roellin E; Bourguignon L; Borgwardt K
    Bioinformatics; 2023 Jan; 39(1):. PubMed ID: 36610707
    [TBL] [Abstract][Full Text] [Related]  

  • 18. FARAO: the flexible all-round annotation organizer.
    Hammarén R; Pal C; Bengtsson-Palme J
    Bioinformatics; 2016 Dec; 32(23):3664-3666. PubMed ID: 27493193
    [TBL] [Abstract][Full Text] [Related]  

  • 19. BioBlend: automating pipeline analyses within Galaxy and CloudMan.
    Sloggett C; Goonasekera N; Afgan E
    Bioinformatics; 2013 Jul; 29(13):1685-6. PubMed ID: 23630176
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Pharokka: a fast scalable bacteriophage annotation tool.
    Bouras G; Nepal R; Houtak G; Psaltis AJ; Wormald PJ; Vreugde S
    Bioinformatics; 2023 Jan; 39(1):. PubMed ID: 36453861
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 24.