182 related articles for article (PubMed ID: 29659792)
1. Tracking the NGS revolution: managing life science research on shared high-performance computing clusters.
Dahlö M; Scofield DG; Schaal W; Spjuth O
Gigascience; 2018 May; 7(5):. PubMed ID: 29659792
[TBL] [Abstract][Full Text] [Related]
2. NEAT: a framework for building fully automated NGS pipelines and analyses.
Schorderet P
BMC Bioinformatics; 2016 Feb; 17():53. PubMed ID: 26830846
[TBL] [Abstract][Full Text] [Related]
3. NGS_SNPAnalyzer: a desktop software supporting genome projects by identifying and visualizing sequence variations from next-generation sequencing data.
Lee DJ; Kwon T; Kim CK; Seol YJ; Park DS; Lee TH; Ahn BO
Genes Genomics; 2020 Nov; 42(11):1311-1317. PubMed ID: 32980993
[TBL] [Abstract][Full Text] [Related]
4. Recommendations on e-infrastructures for next-generation sequencing.
Spjuth O; Bongcam-Rudloff E; Dahlberg J; Dahlö M; Kallio A; Pireddu L; Vezzi F; Korpelainen E
Gigascience; 2016 Jun; 5():26. PubMed ID: 27267963
[TBL] [Abstract][Full Text] [Related]
5. Colib'read on galaxy: a tools suite dedicated to biological information extraction from raw NGS reads.
Le Bras Y; Collin O; Monjeaud C; Lacroix V; Rivals É; Lemaitre C; Miele V; Sacomoto G; Marchet C; Cazaux B; Zine El Aabidine A; Salmela L; Alves-Carvalho S; Andrieux A; Uricaru R; Peterlongo P
Gigascience; 2016; 5():9. PubMed ID: 26870323
[TBL] [Abstract][Full Text] [Related]
6. NGS-FC: A Next-Generation Sequencing Data Format Converter.
Chunjiang Yu ; Wentao Wu ; Jing Wang ; Yuxin Lin ; Yang Yang ; Jiajia Chen ; Fei Zhu ; Bairong Shen
IEEE/ACM Trans Comput Biol Bioinform; 2018; 15(5):1683-1691. PubMed ID: 28682264
[TBL] [Abstract][Full Text] [Related]
7. FDA's Activities Supporting Regulatory Application of "Next Gen" Sequencing Technologies.
Wilson CA; Simonyan V
PDA J Pharm Sci Technol; 2014; 68(6):626-30. PubMed ID: 25475637
[TBL] [Abstract][Full Text] [Related]
8. Leveraging the power of high performance computing for next generation sequencing data analysis: tricks and twists from a high throughput exome workflow.
Kawalia A; Motameny S; Wonczak S; Thiele H; Nieroda L; Jabbari K; Borowski S; Sinha V; Gunia W; Lang U; Achter V; Nürnberg P
PLoS One; 2015; 10(5):e0126321. PubMed ID: 25942438
[TBL] [Abstract][Full Text] [Related]
9. CSI NGS Portal: An Online Platform for Automated NGS Data Analysis and Sharing.
An O; Tan KT; Li Y; Li J; Wu CS; Zhang B; Chen L; Yang H
Int J Mol Sci; 2020 May; 21(11):. PubMed ID: 32481589
[TBL] [Abstract][Full Text] [Related]
10. A comparative study of k-spectrum-based error correction methods for next-generation sequencing data analysis.
Akogwu I; Wang N; Zhang C; Gong P
Hum Genomics; 2016 Jul; 10 Suppl 2(Suppl 2):20. PubMed ID: 27461106
[TBL] [Abstract][Full Text] [Related]
11. ELIXIR-IT HPC@CINECA: high performance computing resources for the bioinformatics community.
Castrignanò T; Gioiosa S; Flati T; Cestari M; Picardi E; Chiara M; Fratelli M; Amente S; Cirilli M; Tangaro MA; Chillemi G; Pesole G; Zambelli F
BMC Bioinformatics; 2020 Aug; 21(Suppl 10):352. PubMed ID: 32838759
[TBL] [Abstract][Full Text] [Related]
12. Analysis of next-generation sequencing data using Galaxy.
Blankenberg D; Hillman-Jackson J
Methods Mol Biol; 2014; 1150():21-43. PubMed ID: 24743989
[TBL] [Abstract][Full Text] [Related]
13. PGen: large-scale genomic variations analysis workflow and browser in SoyKB.
Liu Y; Khan SM; Wang J; Rynge M; Zhang Y; Zeng S; Chen S; Maldonado Dos Santos JV; Valliyodan B; Calyam PP; Merchant N; Nguyen HT; Xu D; Joshi T
BMC Bioinformatics; 2016 Oct; 17(Suppl 13):337. PubMed ID: 27766951
[TBL] [Abstract][Full Text] [Related]
14. SUSHI: an exquisite recipe for fully documented, reproducible and reusable NGS data analysis.
Hatakeyama M; Opitz L; Russo G; Qi W; Schlapbach R; Rehrauer H
BMC Bioinformatics; 2016 Jun; 17(1):228. PubMed ID: 27255077
[TBL] [Abstract][Full Text] [Related]
15. NGSpop: A desktop software that supports population studies by identifying sequence variations from next-generation sequencing data.
Lee DJ; Kwon T; Lee HJ; Oh YH; Kim JH; Lee TH
PLoS One; 2022; 17(11):e0260908. PubMed ID: 36395265
[TBL] [Abstract][Full Text] [Related]
16. SIMBA: a web tool for managing bacterial genome assembly generated by Ion PGM sequencing technology.
Mariano DC; Pereira FL; Aguiar EL; Oliveira LC; Benevides L; Guimarães LC; Folador EL; Sousa TJ; Ghosh P; Barh D; Figueiredo HC; Silva A; Ramos RT; Azevedo VA
BMC Bioinformatics; 2016 Dec; 17(Suppl 18):456. PubMed ID: 28105921
[TBL] [Abstract][Full Text] [Related]
17. APRICOT: Advanced Platform for Reproducible Infrastructures in the Cloud via Open Tools.
Giménez-Alventosa V; Segrelles JD; Moltó G; Roca-Sogorb M
Methods Inf Med; 2020 Dec; 59(S 02):e33-e45. PubMed ID: 32777825
[TBL] [Abstract][Full Text] [Related]
18. ASEQ: fast allele-specific studies from next-generation sequencing data.
Romanel A; Lago S; Prandi D; Sboner A; Demichelis F
BMC Med Genomics; 2015 Mar; 8():9. PubMed ID: 25889339
[TBL] [Abstract][Full Text] [Related]
19. systemPipeR: NGS workflow and report generation environment.
H Backman TW; Girke T
BMC Bioinformatics; 2016 Sep; 17():388. PubMed ID: 27650223
[TBL] [Abstract][Full Text] [Related]
20. Bio-Docklets: virtualization containers for single-step execution of NGS pipelines.
Kim B; Ali T; Lijeron C; Afgan E; Krampis K
Gigascience; 2017 Aug; 6(8):1-7. PubMed ID: 28854616
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
