These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

321 related articles for article (PubMed ID: 29668671)

  • 1. Propagating annotations of molecular networks using in silico fragmentation.
    da Silva RR; Wang M; Nothias LF; van der Hooft JJJ; Caraballo-Rodríguez AM; Fox E; Balunas MJ; Klassen JL; Lopes NP; Dorrestein PC
    PLoS Comput Biol; 2018 Apr; 14(4):e1006089. PubMed ID: 29668671
    [TBL] [Abstract][Full Text] [Related]  

  • 2. [A novel method for efficient screening and annotation of important pathway-associated metabolites based on the modified metabolome and probe molecules].
    Li Z; Zheng F; Xia Y; Zhang X; Wang X; Zhao C; Zhao X; Lu X; Xu G
    Se Pu; 2022 Sep; 40(9):788-796. PubMed ID: 36156625
    [TBL] [Abstract][Full Text] [Related]  

  • 3. MetWork: a web server for natural products anticipation.
    Beauxis Y; Genta-Jouve G
    Bioinformatics; 2019 May; 35(10):1795-1796. PubMed ID: 30295702
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Open access repository-scale propagated nearest neighbor suspect spectral library for untargeted metabolomics.
    Bittremieux W; Avalon NE; Thomas SP; Kakhkhorov SA; Aksenov AA; Gomes PWP; Aceves CM; Caraballo-Rodríguez AM; Gauglitz JM; Gerwick WH; Huan T; Jarmusch AK; Kaddurah-Daouk RF; Kang KB; Kim HW; Kondić T; Mannochio-Russo H; Meehan MJ; Melnik AV; Nothias LF; O'Donovan C; Panitchpakdi M; Petras D; Schmid R; Schymanski EL; van der Hooft JJJ; Weldon KC; Yang H; Xing S; Zemlin J; Wang M; Dorrestein PC
    Nat Commun; 2023 Dec; 14(1):8488. PubMed ID: 38123557
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Reproducible molecular networking of untargeted mass spectrometry data using GNPS.
    Aron AT; Gentry EC; McPhail KL; Nothias LF; Nothias-Esposito M; Bouslimani A; Petras D; Gauglitz JM; Sikora N; Vargas F; van der Hooft JJJ; Ernst M; Kang KB; Aceves CM; Caraballo-Rodríguez AM; Koester I; Weldon KC; Bertrand S; Roullier C; Sun K; Tehan RM; Boya P CA; Christian MH; Gutiérrez M; Ulloa AM; Tejeda Mora JA; Mojica-Flores R; Lakey-Beitia J; Vásquez-Chaves V; Zhang Y; Calderón AI; Tayler N; Keyzers RA; Tugizimana F; Ndlovu N; Aksenov AA; Jarmusch AK; Schmid R; Truman AW; Bandeira N; Wang M; Dorrestein PC
    Nat Protoc; 2020 Jun; 15(6):1954-1991. PubMed ID: 32405051
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Feature-Based Molecular Networking for Metabolite Annotation.
    Phelan VV
    Methods Mol Biol; 2020; 2104():227-243. PubMed ID: 31953821
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Improving annotation propagation on molecular networks through random walks: introducing ChemWalker.
    Borelli TC; Arini GS; Feitosa LGP; Dorrestein PC; Lopes NP; da Silva RR
    Bioinformatics; 2023 Mar; 39(3):. PubMed ID: 36864626
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Ion identity molecular networking for mass spectrometry-based metabolomics in the GNPS environment.
    Schmid R; Petras D; Nothias LF; Wang M; Aron AT; Jagels A; Tsugawa H; Rainer J; Garcia-Aloy M; Dührkop K; Korf A; Pluskal T; Kameník Z; Jarmusch AK; Caraballo-Rodríguez AM; Weldon KC; Nothias-Esposito M; Aksenov AA; Bauermeister A; Albarracin Orio A; Grundmann CO; Vargas F; Koester I; Gauglitz JM; Gentry EC; Hövelmann Y; Kalinina SA; Pendergraft MA; Panitchpakdi M; Tehan R; Le Gouellec A; Aleti G; Mannochio Russo H; Arndt B; Hübner F; Hayen H; Zhi H; Raffatellu M; Prather KA; Aluwihare LI; Böcker S; McPhail KL; Humpf HU; Karst U; Dorrestein PC
    Nat Commun; 2021 Jun; 12(1):3832. PubMed ID: 34158495
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Evaluation of an Artificial Neural Network Retention Index Model for Chemical Structure Identification in Nontargeted Metabolomics.
    Samaraweera MA; Hall LM; Hill DW; Grant DF
    Anal Chem; 2018 Nov; 90(21):12752-12760. PubMed ID: 30350614
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Biologically Consistent Annotation of Metabolomics Data.
    Alden N; Krishnan S; Porokhin V; Raju R; McElearney K; Gilbert A; Lee K
    Anal Chem; 2017 Dec; 89(24):13097-13104. PubMed ID: 29156137
    [TBL] [Abstract][Full Text] [Related]  

  • 11. High-confidence structural annotation of metabolites absent from spectral libraries.
    Hoffmann MA; Nothias LF; Ludwig M; Fleischauer M; Gentry EC; Witting M; Dorrestein PC; Dührkop K; Böcker S
    Nat Biotechnol; 2022 Mar; 40(3):411-421. PubMed ID: 34650271
    [TBL] [Abstract][Full Text] [Related]  

  • 12. MolFind
    Samaraweera MA; Hill DW; Grant DF
    Methods Mol Biol; 2020; 2084():283-295. PubMed ID: 31729668
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Identification of small molecules using accurate mass MS/MS search.
    Kind T; Tsugawa H; Cajka T; Ma Y; Lai Z; Mehta SS; Wohlgemuth G; Barupal DK; Showalter MR; Arita M; Fiehn O
    Mass Spectrom Rev; 2018 Jul; 37(4):513-532. PubMed ID: 28436590
    [TBL] [Abstract][Full Text] [Related]  

  • 14. compMS2Miner: An Automatable Metabolite Identification, Visualization, and Data-Sharing R Package for High-Resolution LC-MS Data Sets.
    Edmands WM; Petrick L; Barupal DK; Scalbert A; Wilson MJ; Wickliffe JK; Rappaport SM
    Anal Chem; 2017 Apr; 89(7):3919-3928. PubMed ID: 28225587
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Metabolite annotation from knowns to unknowns through knowledge-guided multi-layer metabolic networking.
    Zhou Z; Luo M; Zhang H; Yin Y; Cai Y; Zhu ZJ
    Nat Commun; 2022 Nov; 13(1):6656. PubMed ID: 36333358
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Investigation of the chemical compounds in Pheretima aspergillum (E. Perrier) using a combination of mass spectral molecular networking and unsupervised substructure annotation topic modeling together with in silico fragmentation prediction.
    Cheng TF; Zhang YH; Ye J; Jin HZ; Zhang WD
    J Pharm Biomed Anal; 2020 May; 184():113197. PubMed ID: 32120187
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Annotation of metabolites from gas chromatography/atmospheric pressure chemical ionization tandem mass spectrometry data using an in silico generated compound database and MetFrag.
    Ruttkies C; Strehmel N; Scheel D; Neumann S
    Rapid Commun Mass Spectrom; 2015 Aug; 29(16):1521-9. PubMed ID: 26212167
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Targeted Isolation of Neuroprotective Dicoumaroyl Neolignans and Lignans from Sageretia theezans Using in Silico Molecular Network Annotation Propagation-Based Dereplication.
    Kang KB; Park EJ; da Silva RR; Kim HW; Dorrestein PC; Sung SH
    J Nat Prod; 2018 Aug; 81(8):1819-1828. PubMed ID: 30106290
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Customized Consensus Spectral Library Building for Untargeted Quantitative Metabolomics Analysis with Data Independent Acquisition Mass Spectrometry and MetaboDIA Workflow.
    Chen G; Walmsley S; Cheung GCM; Chen L; Cheng CY; Beuerman RW; Wong TY; Zhou L; Choi H
    Anal Chem; 2017 May; 89(9):4897-4906. PubMed ID: 28391692
    [TBL] [Abstract][Full Text] [Related]  

  • 20. In silico fragmentation for computer assisted identification of metabolite mass spectra.
    Wolf S; Schmidt S; Müller-Hannemann M; Neumann S
    BMC Bioinformatics; 2010 Mar; 11():148. PubMed ID: 20307295
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 17.