BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

186 related articles for article (PubMed ID: 29672735)

  • 1. Parallel factor ChIP provides essential internal control for quantitative differential ChIP-seq.
    Guertin MJ; Cullen AE; Markowetz F; Holding AN
    Nucleic Acids Res; 2018 Jul; 46(12):e75. PubMed ID: 29672735
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Quantitative ChIP-Seq normalization reveals global modulation of the epigenome.
    Orlando DA; Chen MW; Brown VE; Solanki S; Choi YJ; Olson ER; Fritz CC; Bradner JE; Guenther MG
    Cell Rep; 2014 Nov; 9(3):1163-70. PubMed ID: 25437568
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Quantitative Comparison of Multiple Chromatin Immunoprecipitation-Sequencing (ChIP-seq) Experiments with spikChIP.
    Blanco E; Ballaré C; Di Croce L; Aranda S
    Methods Mol Biol; 2023; 2624():55-72. PubMed ID: 36723809
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Native internally calibrated chromatin immunoprecipitation for quantitative studies of histone post-translational modifications.
    Grzybowski AT; Shah RN; Richter WF; Ruthenburg AJ
    Nat Protoc; 2019 Dec; 14(12):3275-3302. PubMed ID: 31723301
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Quantifying ChIP-seq data: a spiking method providing an internal reference for sample-to-sample normalization.
    Bonhoure N; Bounova G; Bernasconi D; Praz V; Lammers F; Canella D; Willis IM; Herr W; Hernandez N; Delorenzi M;
    Genome Res; 2014 Jul; 24(7):1157-68. PubMed ID: 24709819
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Greenscreen: A simple method to remove artifactual signals and enrich for true peaks in genomic datasets including ChIP-seq data.
    Klasfeld S; Roulé T; Wagner D
    Plant Cell; 2022 Nov; 34(12):4795-4815. PubMed ID: 36124976
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Large-scale quality analysis of published ChIP-seq data.
    Marinov GK; Kundaje A; Park PJ; Wold BJ
    G3 (Bethesda); 2014 Feb; 4(2):209-23. PubMed ID: 24347632
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Is this the right normalization? A diagnostic tool for ChIP-seq normalization.
    Angelini C; Heller R; Volkinshtein R; Yekutieli D
    BMC Bioinformatics; 2015 May; 16():150. PubMed ID: 25957089
    [TBL] [Abstract][Full Text] [Related]  

  • 9. An Alternative Approach to ChIP-Seq Normalization Enables Detection of Genome-Wide Changes in Histone H3 Lysine 27 Trimethylation upon EZH2 Inhibition.
    Egan B; Yuan CC; Craske ML; Labhart P; Guler GD; Arnott D; Maile TM; Busby J; Henry C; Kelly TK; Tindell CA; Jhunjhunwala S; Zhao F; Hatton C; Bryant BM; Classon M; Trojer P
    PLoS One; 2016; 11(11):e0166438. PubMed ID: 27875550
    [TBL] [Abstract][Full Text] [Related]  

  • 10. A quality control system for profiles obtained by ChIP sequencing.
    Mendoza-Parra MA; Van Gool W; Mohamed Saleem MA; Ceschin DG; Gronemeyer H
    Nucleic Acids Res; 2013 Nov; 41(21):e196. PubMed ID: 24038469
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Genome-wide profiling of histone H3K27 acetylation featured fatty acid signalling in pancreatic beta cells in diet-induced obesity in mice.
    Nammo T; Udagawa H; Funahashi N; Kawaguchi M; Uebanso T; Hiramoto M; Nishimura W; Yasuda K
    Diabetologia; 2018 Dec; 61(12):2608-2620. PubMed ID: 30284014
    [TBL] [Abstract][Full Text] [Related]  

  • 12. The use of a synthetic DNA-antibody complex as external reference for chromatin immunoprecipitation.
    Eberle AB; Böhm S; Östlund Farrants AK; Visa N
    Anal Biochem; 2012 Jul; 426(2):147-52. PubMed ID: 22543092
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Chromatin Immunoprecipitation-Sequencing (ChIP-seq) for Mapping of Estrogen Receptor-Chromatin Interactions in Breast Cancer.
    Holmes KA; Brown GD; Carroll JS
    Methods Mol Biol; 2016; 1366():79-98. PubMed ID: 26585129
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Cell-type specificity of ChIP-predicted transcription factor binding sites.
    Håndstad T; Rye M; Močnik R; Drabløs F; Sætrom P
    BMC Genomics; 2012 Aug; 13():372. PubMed ID: 22863112
    [TBL] [Abstract][Full Text] [Related]  

  • 15. ChIP-chip versus ChIP-seq: lessons for experimental design and data analysis.
    Ho JW; Bishop E; Karchenko PV; Nègre N; White KP; Park PJ
    BMC Genomics; 2011 Feb; 12():134. PubMed ID: 21356108
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Discovering transcription factor binding sites in highly repetitive regions of genomes with multi-read analysis of ChIP-Seq data.
    Chung D; Kuan PF; Li B; Sanalkumar R; Liang K; Bresnick EH; Dewey C; Keleş S
    PLoS Comput Biol; 2011 Jul; 7(7):e1002111. PubMed ID: 21779159
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Calibrating ChIP-Seq with Nucleosomal Internal Standards to Measure Histone Modification Density Genome Wide.
    Grzybowski AT; Chen Z; Ruthenburg AJ
    Mol Cell; 2015 Jun; 58(5):886-99. PubMed ID: 26004229
    [TBL] [Abstract][Full Text] [Related]  

  • 18. HiChIP: a high-throughput pipeline for integrative analysis of ChIP-Seq data.
    Yan H; Evans J; Kalmbach M; Moore R; Middha S; Luban S; Wang L; Bhagwate A; Li Y; Sun Z; Chen X; Kocher JP
    BMC Bioinformatics; 2014 Aug; 15(1):280. PubMed ID: 25128017
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Measuring Sister Chromatid Cohesion Protein Genome Occupancy in Drosophila melanogaster by ChIP-seq.
    Dorsett D; Misulovin Z
    Methods Mol Biol; 2017; 1515():125-139. PubMed ID: 27797077
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Role of ChIP-seq in the discovery of transcription factor binding sites, differential gene regulation mechanism, epigenetic marks and beyond.
    Mundade R; Ozer HG; Wei H; Prabhu L; Lu T
    Cell Cycle; 2014; 13(18):2847-52. PubMed ID: 25486472
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 10.