These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

182 related articles for article (PubMed ID: 29672735)

  • 1. Parallel factor ChIP provides essential internal control for quantitative differential ChIP-seq.
    Guertin MJ; Cullen AE; Markowetz F; Holding AN
    Nucleic Acids Res; 2018 Jul; 46(12):e75. PubMed ID: 29672735
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Quantitative ChIP-Seq normalization reveals global modulation of the epigenome.
    Orlando DA; Chen MW; Brown VE; Solanki S; Choi YJ; Olson ER; Fritz CC; Bradner JE; Guenther MG
    Cell Rep; 2014 Nov; 9(3):1163-70. PubMed ID: 25437568
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Quantitative Comparison of Multiple Chromatin Immunoprecipitation-Sequencing (ChIP-seq) Experiments with spikChIP.
    Blanco E; Ballaré C; Di Croce L; Aranda S
    Methods Mol Biol; 2023; 2624():55-72. PubMed ID: 36723809
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Quantifying ChIP-seq data: a spiking method providing an internal reference for sample-to-sample normalization.
    Bonhoure N; Bounova G; Bernasconi D; Praz V; Lammers F; Canella D; Willis IM; Herr W; Hernandez N; Delorenzi M;
    Genome Res; 2014 Jul; 24(7):1157-68. PubMed ID: 24709819
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Native internally calibrated chromatin immunoprecipitation for quantitative studies of histone post-translational modifications.
    Grzybowski AT; Shah RN; Richter WF; Ruthenburg AJ
    Nat Protoc; 2019 Dec; 14(12):3275-3302. PubMed ID: 31723301
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Greenscreen: A simple method to remove artifactual signals and enrich for true peaks in genomic datasets including ChIP-seq data.
    Klasfeld S; Roulé T; Wagner D
    Plant Cell; 2022 Nov; 34(12):4795-4815. PubMed ID: 36124976
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Large-scale quality analysis of published ChIP-seq data.
    Marinov GK; Kundaje A; Park PJ; Wold BJ
    G3 (Bethesda); 2014 Feb; 4(2):209-23. PubMed ID: 24347632
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Is this the right normalization? A diagnostic tool for ChIP-seq normalization.
    Angelini C; Heller R; Volkinshtein R; Yekutieli D
    BMC Bioinformatics; 2015 May; 16():150. PubMed ID: 25957089
    [TBL] [Abstract][Full Text] [Related]  

  • 9. An Alternative Approach to ChIP-Seq Normalization Enables Detection of Genome-Wide Changes in Histone H3 Lysine 27 Trimethylation upon EZH2 Inhibition.
    Egan B; Yuan CC; Craske ML; Labhart P; Guler GD; Arnott D; Maile TM; Busby J; Henry C; Kelly TK; Tindell CA; Jhunjhunwala S; Zhao F; Hatton C; Bryant BM; Classon M; Trojer P
    PLoS One; 2016; 11(11):e0166438. PubMed ID: 27875550
    [TBL] [Abstract][Full Text] [Related]  

  • 10. A quality control system for profiles obtained by ChIP sequencing.
    Mendoza-Parra MA; Van Gool W; Mohamed Saleem MA; Ceschin DG; Gronemeyer H
    Nucleic Acids Res; 2013 Nov; 41(21):e196. PubMed ID: 24038469
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Genome-wide profiling of histone H3K27 acetylation featured fatty acid signalling in pancreatic beta cells in diet-induced obesity in mice.
    Nammo T; Udagawa H; Funahashi N; Kawaguchi M; Uebanso T; Hiramoto M; Nishimura W; Yasuda K
    Diabetologia; 2018 Dec; 61(12):2608-2620. PubMed ID: 30284014
    [TBL] [Abstract][Full Text] [Related]  

  • 12. The use of a synthetic DNA-antibody complex as external reference for chromatin immunoprecipitation.
    Eberle AB; Böhm S; Östlund Farrants AK; Visa N
    Anal Biochem; 2012 Jul; 426(2):147-52. PubMed ID: 22543092
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Chromatin Immunoprecipitation-Sequencing (ChIP-seq) for Mapping of Estrogen Receptor-Chromatin Interactions in Breast Cancer.
    Holmes KA; Brown GD; Carroll JS
    Methods Mol Biol; 2016; 1366():79-98. PubMed ID: 26585129
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Cell-type specificity of ChIP-predicted transcription factor binding sites.
    Håndstad T; Rye M; Močnik R; Drabløs F; Sætrom P
    BMC Genomics; 2012 Aug; 13():372. PubMed ID: 22863112
    [TBL] [Abstract][Full Text] [Related]  

  • 15. ChIP-chip versus ChIP-seq: lessons for experimental design and data analysis.
    Ho JW; Bishop E; Karchenko PV; Nègre N; White KP; Park PJ
    BMC Genomics; 2011 Feb; 12():134. PubMed ID: 21356108
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Discovering transcription factor binding sites in highly repetitive regions of genomes with multi-read analysis of ChIP-Seq data.
    Chung D; Kuan PF; Li B; Sanalkumar R; Liang K; Bresnick EH; Dewey C; Keleş S
    PLoS Comput Biol; 2011 Jul; 7(7):e1002111. PubMed ID: 21779159
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Calibrating ChIP-Seq with Nucleosomal Internal Standards to Measure Histone Modification Density Genome Wide.
    Grzybowski AT; Chen Z; Ruthenburg AJ
    Mol Cell; 2015 Jun; 58(5):886-99. PubMed ID: 26004229
    [TBL] [Abstract][Full Text] [Related]  

  • 18. HiChIP: a high-throughput pipeline for integrative analysis of ChIP-Seq data.
    Yan H; Evans J; Kalmbach M; Moore R; Middha S; Luban S; Wang L; Bhagwate A; Li Y; Sun Z; Chen X; Kocher JP
    BMC Bioinformatics; 2014 Aug; 15(1):280. PubMed ID: 25128017
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Measuring Sister Chromatid Cohesion Protein Genome Occupancy in Drosophila melanogaster by ChIP-seq.
    Dorsett D; Misulovin Z
    Methods Mol Biol; 2017; 1515():125-139. PubMed ID: 27797077
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Role of ChIP-seq in the discovery of transcription factor binding sites, differential gene regulation mechanism, epigenetic marks and beyond.
    Mundade R; Ozer HG; Wei H; Prabhu L; Lu T
    Cell Cycle; 2014; 13(18):2847-52. PubMed ID: 25486472
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 10.