185 related articles for article (PubMed ID: 29673323)
1. Indel detection from DNA and RNA sequencing data with transIndel.
Yang R; Van Etten JL; Dehm SM
BMC Genomics; 2018 Apr; 19(1):270. PubMed ID: 29673323
[TBL] [Abstract][Full Text] [Related]
2. Detecting Medium and Large Insertions and Deletions with transIndel.
Wang TY; Yang R
Methods Mol Biol; 2022; 2493():67-75. PubMed ID: 35751809
[TBL] [Abstract][Full Text] [Related]
3. Read-Split-Run: an improved bioinformatics pipeline for identification of genome-wide non-canonical spliced regions using RNA-Seq data.
Bai Y; Kinne J; Donham B; Jiang F; Ding L; Hassler JR; Kaufman RJ
BMC Genomics; 2016 Aug; 17 Suppl 7(Suppl 7):503. PubMed ID: 27556805
[TBL] [Abstract][Full Text] [Related]
4. Indel detection from RNA-seq data: tool evaluation and strategies for accurate detection of actionable mutations.
Sun Z; Bhagwate A; Prodduturi N; Yang P; Kocher JA
Brief Bioinform; 2017 Nov; 18(6):973-983. PubMed ID: 27473065
[TBL] [Abstract][Full Text] [Related]
5. Using high-throughput sequencing transcriptome data for INDEL detection: challenges for cancer drug discovery.
Wajnberg G; Passetti F
Expert Opin Drug Discov; 2016; 11(3):257-68. PubMed ID: 26787005
[TBL] [Abstract][Full Text] [Related]
6. Indel sensitive and comprehensive variant/mutation detection from RNA sequencing data for precision medicine.
Prodduturi N; Bhagwate A; Kocher JA; Sun Z
BMC Med Genomics; 2018 Sep; 11(Suppl 3):67. PubMed ID: 30255803
[TBL] [Abstract][Full Text] [Related]
7. Identification of somatic mutations in human prostate cancer by RNA-Seq.
Xu X; Zhu K; Liu F; Wang Y; Shen J; Jin J; Wang Z; Chen L; Li J; Xu M
Gene; 2013 May; 519(2):343-7. PubMed ID: 23434521
[TBL] [Abstract][Full Text] [Related]
8. TAP: a targeted clinical genomics pipeline for detecting transcript variants using RNA-seq data.
Chiu R; Nip KM; Chu J; Birol I
BMC Med Genomics; 2018 Sep; 11(1):79. PubMed ID: 30200994
[TBL] [Abstract][Full Text] [Related]
9. The challenge of detecting indels in bacterial genomes from short-read sequencing data.
Steglich M; Nübel U
J Biotechnol; 2017 May; 250():11-15. PubMed ID: 28267569
[TBL] [Abstract][Full Text] [Related]
10. Gene expression and splicing alterations analyzed by high throughput RNA sequencing of chronic lymphocytic leukemia specimens.
Liao W; Jordaan G; Nham P; Phan RT; Pelegrini M; Sharma S
BMC Cancer; 2015 Oct; 15():714. PubMed ID: 26474785
[TBL] [Abstract][Full Text] [Related]
11. ContextMap 2: fast and accurate context-based RNA-seq mapping.
Bonfert T; Kirner E; Csaba G; Zimmer R; Friedel CC
BMC Bioinformatics; 2015 Apr; 16():122. PubMed ID: 25928589
[TBL] [Abstract][Full Text] [Related]
12. ChimPipe: accurate detection of fusion genes and transcription-induced chimeras from RNA-seq data.
Rodríguez-Martín B; Palumbo E; Marco-Sola S; Griebel T; Ribeca P; Alonso G; Rastrojo A; Aguado B; Guigó R; Djebali S
BMC Genomics; 2017 Jan; 18(1):7. PubMed ID: 28049418
[TBL] [Abstract][Full Text] [Related]
13. SiNVICT: ultra-sensitive detection of single nucleotide variants and indels in circulating tumour DNA.
Kockan C; Hach F; Sarrafi I; Bell RH; McConeghy B; Beja K; Haegert A; Wyatt AW; Volik SV; Chi KN; Collins CC; Sahinalp SC
Bioinformatics; 2017 Jan; 33(1):26-34. PubMed ID: 27531099
[TBL] [Abstract][Full Text] [Related]
14. Genome-wide characterization of insertion and deletion variation in chicken using next generation sequencing.
Yan Y; Yi G; Sun C; Qu L; Yang N
PLoS One; 2014; 9(8):e104652. PubMed ID: 25133774
[TBL] [Abstract][Full Text] [Related]
15. ScanExitronLR: characterization and quantification of exitron splicing events in long-read RNA-seq data.
Fry J; Li Y; Yang R
Bioinformatics; 2022 Oct; 38(21):4966-4968. PubMed ID: 36099042
[TBL] [Abstract][Full Text] [Related]
16. A universal algorithm for de novo decrypting of heterozygous indel sequences: a tool for personalized medicine.
Lam CW
Clin Chim Acta; 2008 Mar; 389(1-2):7-13. PubMed ID: 18078814
[TBL] [Abstract][Full Text] [Related]
17. ScanNeo: identifying indel-derived neoantigens using RNA-Seq data.
Wang TY; Wang L; Alam SK; Hoeppner LH; Yang R
Bioinformatics; 2019 Oct; 35(20):4159-4161. PubMed ID: 30887025
[TBL] [Abstract][Full Text] [Related]
18. RNAIndel: discovering somatic coding indels from tumor RNA-Seq data.
Hagiwara K; Ding L; Edmonson MN; Rice SV; Newman S; Easton J; Dai J; Meshinchi S; Ries RE; Rusch M; Zhang J
Bioinformatics; 2020 Mar; 36(5):1382-1390. PubMed ID: 31593214
[TBL] [Abstract][Full Text] [Related]
19. INDELseek: detection of complex insertions and deletions from next-generation sequencing data.
Au CH; Leung AY; Kwong A; Chan TL; Ma ES
BMC Genomics; 2017 Jan; 18(1):16. PubMed ID: 28056804
[TBL] [Abstract][Full Text] [Related]
20. Optimized detection of insertions/deletions (INDELs) in whole-exome sequencing data.
Kim BY; Park JH; Jo HY; Koo SK; Park MH
PLoS One; 2017; 12(8):e0182272. PubMed ID: 28792971
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
