535 related articles for article (PubMed ID: 29679021)
1. Systematic evaluation of RNA quality, microarray data reliability and pathway analysis in fresh, fresh frozen and formalin-fixed paraffin-embedded tissue samples.
Wimmer I; Tröscher AR; Brunner F; Rubino SJ; Bien CG; Weiner HL; Lassmann H; Bauer J
Sci Rep; 2018 Apr; 8(1):6351. PubMed ID: 29679021
[TBL] [Abstract][Full Text] [Related]
2. Preparation of archival formalin-fixed paraffin-embedded mouse liver samples for use with the Agilent gene expression microarray platform.
Jackson AF; Williams A; Moffat I; Phillips SL; Recio L; Waters MD; Lambert IB; Yauk CL
J Pharmacol Toxicol Methods; 2013; 68(2):260-268. PubMed ID: 23458726
[TBL] [Abstract][Full Text] [Related]
3. Mining the Archives: A Cross-Platform Analysis of Gene Expression Profiles in Archival Formalin-Fixed Paraffin-Embedded Tissues.
Webster AF; Zumbo P; Fostel J; Gandara J; Hester SD; Recio L; Williams A; Wood CE; Yauk CL; Mason CE
Toxicol Sci; 2015 Dec; 148(2):460-72. PubMed ID: 26361796
[TBL] [Abstract][Full Text] [Related]
4. Analyses and interpretation of whole-genome gene expression from formalin-fixed paraffin-embedded tissue: an illustration with breast cancer tissues.
Kibriya MG; Jasmine F; Roy S; Paul-Brutus RM; Argos M; Ahsan H
BMC Genomics; 2010 Nov; 11():622. PubMed ID: 21059268
[TBL] [Abstract][Full Text] [Related]
5. Next-generation sequencing of RNA and DNA isolated from paired fresh-frozen and formalin-fixed paraffin-embedded samples of human cancer and normal tissue.
Hedegaard J; Thorsen K; Lund MK; Hein AM; Hamilton-Dutoit SJ; Vang S; Nordentoft I; Birkenkamp-Demtröder K; Kruhøffer M; Hager H; Knudsen B; Andersen CL; Sørensen KD; Pedersen JS; Ørntoft TF; Dyrskjøt L
PLoS One; 2014; 9(5):e98187. PubMed ID: 24878701
[TBL] [Abstract][Full Text] [Related]
6. Gene expression profiles from formalin fixed paraffin embedded breast cancer tissue are largely comparable to fresh frozen matched tissue.
Mittempergher L; de Ronde JJ; Nieuwland M; Kerkhoven RM; Simon I; Rutgers EJ; Wessels LF; Van't Veer LJ
PLoS One; 2011 Feb; 6(2):e17163. PubMed ID: 21347257
[TBL] [Abstract][Full Text] [Related]
7. Robust transcriptional tumor signatures applicable to both formalin-fixed paraffin-embedded and fresh-frozen samples.
Chen R; Guan Q; Cheng J; He J; Liu H; Cai H; Hong G; Zhang J; Li N; Ao L; Guo Z
Oncotarget; 2017 Jan; 8(4):6652-6662. PubMed ID: 28036264
[TBL] [Abstract][Full Text] [Related]
8. Application of the 3' mRNA-Seq using unique molecular identifiers in highly degraded RNA derived from formalin-fixed, paraffin-embedded tissue.
Jang JS; Holicky E; Lau J; McDonough S; Mutawe M; Koster MJ; Warrington KJ; Cuninngham JM
BMC Genomics; 2021 Oct; 22(1):759. PubMed ID: 34689749
[TBL] [Abstract][Full Text] [Related]
9. Whole-genome gene expression profiling of formalin-fixed, paraffin-embedded tissue samples.
April C; Klotzle B; Royce T; Wickham-Garcia E; Boyaniwsky T; Izzo J; Cox D; Jones W; Rubio R; Holton K; Matulonis U; Quackenbush J; Fan JB
PLoS One; 2009 Dec; 4(12):e8162. PubMed ID: 19997620
[TBL] [Abstract][Full Text] [Related]
10. RNA-seq RNAaccess identified as the preferred method for gene expression analysis of low quality FFPE samples.
Song K; Elboudwarej E; Zhao X; Zhuo L; Pan D; Liu J; Brachmann C; Patterson SD; Yoon OK; Zavodovskaya M
PLoS One; 2023; 18(10):e0293400. PubMed ID: 37883360
[TBL] [Abstract][Full Text] [Related]
11. Feasibility of developing reliable gene expression modules from FFPE derived RNA profiled on Affymetrix arrays.
Jose V; Fumagalli D; Rothé F; Majjaj S; Loi S; Michiels S; Sotiriou C
PLoS One; 2018; 13(8):e0203346. PubMed ID: 30169535
[TBL] [Abstract][Full Text] [Related]
12. Whole-Transcriptome profiling of formalin-fixed, paraffin-embedded renal cell carcinoma by RNA-seq.
Li P; Conley A; Zhang H; Kim HL
BMC Genomics; 2014 Dec; 15(1):1087. PubMed ID: 25495041
[TBL] [Abstract][Full Text] [Related]
13. Comparison of RNA-Seq by poly (A) capture, ribosomal RNA depletion, and DNA microarray for expression profiling.
Zhao W; He X; Hoadley KA; Parker JS; Hayes DN; Perou CM
BMC Genomics; 2014 Jun; 15(1):419. PubMed ID: 24888378
[TBL] [Abstract][Full Text] [Related]
14. Comparison of triple-negative breast cancer molecular subtyping using RNA from matched fresh-frozen versus formalin-fixed paraffin-embedded tissue.
Jovanović B; Sheng Q; Seitz RS; Lawrence KD; Morris SW; Thomas LR; Hout DR; Schweitzer BL; Guo Y; Pietenpol JA; Lehmann BD
BMC Cancer; 2017 Apr; 17(1):241. PubMed ID: 28376728
[TBL] [Abstract][Full Text] [Related]
15. Identification and validation of differentially expressed transcripts by RNA-sequencing of formalin-fixed, paraffin-embedded (FFPE) lung tissue from patients with Idiopathic Pulmonary Fibrosis.
Vukmirovic M; Herazo-Maya JD; Blackmon J; Skodric-Trifunovic V; Jovanovic D; Pavlovic S; Stojsic J; Zeljkovic V; Yan X; Homer R; Stefanovic B; Kaminski N
BMC Pulm Med; 2017 Jan; 17(1):15. PubMed ID: 28081703
[TBL] [Abstract][Full Text] [Related]
16. Gene expression profiling of RNA extracted from FFPE tissues: NuGEN technologies' whole-transcriptome amplification system.
Turner L; Heath JD; Kurn N
Methods Mol Biol; 2011; 724():269-80. PubMed ID: 21370019
[TBL] [Abstract][Full Text] [Related]
17. Quantitative expression profiling in formalin-fixed paraffin-embedded samples by affymetrix microarrays.
Abdueva D; Wing M; Schaub B; Triche T; Davicioni E
J Mol Diagn; 2010 Jul; 12(4):409-17. PubMed ID: 20522636
[TBL] [Abstract][Full Text] [Related]
18. The impact of RNA extraction method on accurate RNA sequencing from formalin-fixed paraffin-embedded tissues.
Marczyk M; Fu C; Lau R; Du L; Trevarton AJ; Sinn BV; Gould RE; Pusztai L; Hatzis C; Symmans WF
BMC Cancer; 2019 Dec; 19(1):1189. PubMed ID: 31805884
[TBL] [Abstract][Full Text] [Related]
19. Gene expression profiles of gliomas in formalin-fixed paraffin-embedded material.
Gravendeel LA; de Rooi JJ; Eilers PH; van den Bent MJ; Sillevis Smitt PA; French PJ
Br J Cancer; 2012 Jan; 106(3):538-45. PubMed ID: 22187034
[TBL] [Abstract][Full Text] [Related]
20. MethCORR infers gene expression from DNA methylation and allows molecular analysis of ten common cancer types using fresh-frozen and formalin-fixed paraffin-embedded tumor samples.
Mattesen TB; Andersen CL; Bramsen JB
Clin Epigenetics; 2021 Jan; 13(1):20. PubMed ID: 33509261
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
