BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

204 related articles for article (PubMed ID: 29683381)

  • 1. Pseudouridines have context-dependent mutation and stop rates in high-throughput sequencing.
    Zhou KI; Clark WC; Pan DW; Eckwahl MJ; Dai Q; Pan T
    RNA Biol; 2018; 15(7):892-900. PubMed ID: 29683381
    [TBL] [Abstract][Full Text] [Related]  

  • 2. mito-Ψ-Seq: A High-Throughput Method for Systematic Mapping of Pseudouridine Within Mitochondrial RNA.
    Sas-Chen A; Nir R; Schwartz S
    Methods Mol Biol; 2021; 2192():103-115. PubMed ID: 33230769
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Bisulfite and Nanopore Sequencing for Pseudouridine in RNA.
    Burrows CJ; Fleming AM
    Acc Chem Res; 2023 Oct; 56(19):2740-2751. PubMed ID: 37700703
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Sensitive and quantitative probing of pseudouridine modification in mRNA and long noncoding RNA.
    Zhang W; Eckwahl MJ; Zhou KI; Pan T
    RNA; 2019 Sep; 25(9):1218-1225. PubMed ID: 31227565
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Pseudouridine RNA modification detection and quantification by RT-PCR.
    Zhang W; Pan T
    Methods; 2022 Jul; 203():1-4. PubMed ID: 34020036
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Chemical pulldown reveals dynamic pseudouridylation of the mammalian transcriptome.
    Li X; Zhu P; Ma S; Song J; Bai J; Sun F; Yi C
    Nat Chem Biol; 2015 Aug; 11(8):592-7. PubMed ID: 26075521
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Mapping pseudouridines in RNA molecules.
    Ofengand J; Del Campo M; Kaya Y
    Methods; 2001 Nov; 25(3):365-73. PubMed ID: 11860291
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Pseudouridine site assignment by high-throughput in vitro RNA pseudouridylation and sequencing.
    Martinez NM; Schaening-Burgos C; Gilbert WV
    Methods Enzymol; 2021; 658():277-310. PubMed ID: 34517951
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Quantitative base-resolution sequencing technology for mapping pseudouridines in mammalian mRNA.
    Zhang LS; Dai Q; He C
    Methods Enzymol; 2023; 692():23-38. PubMed ID: 37925181
    [TBL] [Abstract][Full Text] [Related]  

  • 10. A Radiolabeling-Free, qPCR-Based Method for Locus-Specific Pseudouridine Detection.
    Lei Z; Yi C
    Angew Chem Int Ed Engl; 2017 Nov; 56(47):14878-14882. PubMed ID: 28960747
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Transcriptome-wide mapping of pseudouridines: pseudouridine synthases modify specific mRNAs in S. cerevisiae.
    Lovejoy AF; Riordan DP; Brown PO
    PLoS One; 2014; 9(10):e110799. PubMed ID: 25353621
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Pseudouridylation meets next-generation sequencing.
    Zaringhalam M; Papavasiliou FN
    Methods; 2016 Sep; 107():63-72. PubMed ID: 26968262
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Data Analysis Pipeline for Detection and Quantification of Pseudouridine (ψ) in RNA by HydraPsiSeq.
    Pichot F; Marchand V; Helm M; Motorin Y
    Methods Mol Biol; 2023; 2624():207-223. PubMed ID: 36723818
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Interferon inducible pseudouridine modification in human mRNA by quantitative nanopore profiling.
    Huang S; Zhang W; Katanski CD; Dersh D; Dai Q; Lolans K; Yewdell J; Eren AM; Pan T
    Genome Biol; 2021 Dec; 22(1):330. PubMed ID: 34872593
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Quantitative sequencing using BID-seq uncovers abundant pseudouridines in mammalian mRNA at base resolution.
    Dai Q; Zhang LS; Sun HL; Pajdzik K; Yang L; Ye C; Ju CW; Liu S; Wang Y; Zheng Z; Zhang L; Harada BT; Dou X; Irkliyenko I; Feng X; Zhang W; Pan T; He C
    Nat Biotechnol; 2023 Mar; 41(3):344-354. PubMed ID: 36302989
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Mapping to nucleotide resolution of pseudouridine residues in large subunit ribosomal RNAs from representative eukaryotes, prokaryotes, archaebacteria, mitochondria and chloroplasts.
    Ofengand J; Bakin A
    J Mol Biol; 1997 Feb; 266(2):246-68. PubMed ID: 9047361
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Pseudouridine in RNA: what, where, how, and why.
    Charette M; Gray MW
    IUBMB Life; 2000 May; 49(5):341-51. PubMed ID: 10902565
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Penguin: A tool for predicting pseudouridine sites in direct RNA nanopore sequencing data.
    Hassan D; Acevedo D; Daulatabad SV; Mir Q; Janga SC
    Methods; 2022 Jul; 203():478-487. PubMed ID: 35182749
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Synthesis, Function, and Heterogeneity of snoRNA-Guided Posttranscriptional Nucleoside Modifications in Eukaryotic Ribosomal RNAs.
    Henras AK; Plisson-Chastang C; Humbert O; Romeo Y; Henry Y
    Enzymes; 2017; 41():169-213. PubMed ID: 28601222
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Investigating Pseudouridylation Mechanisms by High-Throughput in Vitro RNA Pseudouridylation and Sequencing.
    Martinez NM; Gilbert WV
    Methods Mol Biol; 2021; 2298():379-397. PubMed ID: 34085256
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 11.