364 related articles for article (PubMed ID: 29685368)
1. Principles of Chromosome Architecture Revealed by Hi-C.
Eagen KP
Trends Biochem Sci; 2018 Jun; 43(6):469-478. PubMed ID: 29685368
[TBL] [Abstract][Full Text] [Related]
2. A chromosome folding intermediate at the condensin-to-cohesin transition during telophase.
Abramo K; Valton AL; Venev SV; Ozadam H; Fox AN; Dekker J
Nat Cell Biol; 2019 Nov; 21(11):1393-1402. PubMed ID: 31685986
[TBL] [Abstract][Full Text] [Related]
3. Chromatin extrusion explains key features of loop and domain formation in wild-type and engineered genomes.
Sanborn AL; Rao SS; Huang SC; Durand NC; Huntley MH; Jewett AI; Bochkov ID; Chinnappan D; Cutkosky A; Li J; Geeting KP; Gnirke A; Melnikov A; McKenna D; Stamenova EK; Lander ES; Aiden EL
Proc Natl Acad Sci U S A; 2015 Nov; 112(47):E6456-65. PubMed ID: 26499245
[TBL] [Abstract][Full Text] [Related]
4. 5C-ID: Increased resolution Chromosome-Conformation-Capture-Carbon-Copy with in situ 3C and double alternating primer design.
Kim JH; Titus KR; Gong W; Beagan JA; Cao Z; Phillips-Cremins JE
Methods; 2018 Jun; 142():39-46. PubMed ID: 29772275
[TBL] [Abstract][Full Text] [Related]
5. Hi-C 2.0: An optimized Hi-C procedure for high-resolution genome-wide mapping of chromosome conformation.
Belaghzal H; Dekker J; Gibcus JH
Methods; 2017 Jul; 123():56-65. PubMed ID: 28435001
[TBL] [Abstract][Full Text] [Related]
6. Capturing Chromosome Conformation Across Length Scales.
Yang L; Akgol Oksuz B; Dekker J; Gibcus JH
J Vis Exp; 2023 Jan; (191):. PubMed ID: 36744801
[TBL] [Abstract][Full Text] [Related]
7. Chromosome Conformation Capture Followed by Genome-Wide Sequencing (Hi-C) in Drosophila Embryos.
Cardamone F; Zhan Y; Iovino N; Zenk F
Methods Mol Biol; 2023; 2655():41-55. PubMed ID: 37212987
[TBL] [Abstract][Full Text] [Related]
8. Topologically associating domains and chromatin loops depend on cohesin and are regulated by CTCF, WAPL, and PDS5 proteins.
Wutz G; Várnai C; Nagasaka K; Cisneros DA; Stocsits RR; Tang W; Schoenfelder S; Jessberger G; Muhar M; Hossain MJ; Walther N; Koch B; Kueblbeck M; Ellenberg J; Zuber J; Fraser P; Peters JM
EMBO J; 2017 Dec; 36(24):3573-3599. PubMed ID: 29217591
[TBL] [Abstract][Full Text] [Related]
9. Chromatin organization by an interplay of loop extrusion and compartmental segregation.
Nuebler J; Fudenberg G; Imakaev M; Abdennur N; Mirny LA
Proc Natl Acad Sci U S A; 2018 Jul; 115(29):E6697-E6706. PubMed ID: 29967174
[TBL] [Abstract][Full Text] [Related]
10. FAN-C: a feature-rich framework for the analysis and visualisation of chromosome conformation capture data.
Kruse K; Hug CB; Vaquerizas JM
Genome Biol; 2020 Dec; 21(1):303. PubMed ID: 33334380
[TBL] [Abstract][Full Text] [Related]
11. Chromatin Conformation Capture-Based Analysis of Nuclear Architecture.
Grob S; Grossniklaus U
Methods Mol Biol; 2017; 1456():15-32. PubMed ID: 27770354
[TBL] [Abstract][Full Text] [Related]
12. Topoisomerase II beta interacts with cohesin and CTCF at topological domain borders.
Uusküla-Reimand L; Hou H; Samavarchi-Tehrani P; Rudan MV; Liang M; Medina-Rivera A; Mohammed H; Schmidt D; Schwalie P; Young EJ; Reimand J; Hadjur S; Gingras AC; Wilson MD
Genome Biol; 2016 Aug; 17(1):182. PubMed ID: 27582050
[TBL] [Abstract][Full Text] [Related]
13. Super-resolution visualization and modeling of human chromosomal regions reveals cohesin-dependent loop structures.
Hao X; Parmar JJ; Lelandais B; Aristov A; Ouyang W; Weber C; Zimmer C
Genome Biol; 2021 May; 22(1):150. PubMed ID: 33975635
[TBL] [Abstract][Full Text] [Related]
14. Hi-C: a method to study the three-dimensional architecture of genomes.
van Berkum NL; Lieberman-Aiden E; Williams L; Imakaev M; Gnirke A; Mirny LA; Dekker J; Lander ES
J Vis Exp; 2010 May; (39):. PubMed ID: 20461051
[TBL] [Abstract][Full Text] [Related]
15. Structural basis for the preservation of a subset of topologically associating domains in interphase chromosomes upon cohesin depletion.
Jeong D; Shi G; Li X; Thirumalai D
Elife; 2024 Mar; 12():. PubMed ID: 38502563
[TBL] [Abstract][Full Text] [Related]
16. Practical Analysis of Hi-C Data: Generating A/B Compartment Profiles.
Miura H; Poonperm R; Takahashi S; Hiratani I
Methods Mol Biol; 2018; 1861():221-245. PubMed ID: 30218370
[TBL] [Abstract][Full Text] [Related]
17. Hi-C 3.0: Improved Protocol for Genome-Wide Chromosome Conformation Capture.
Lafontaine DL; Yang L; Dekker J; Gibcus JH
Curr Protoc; 2021 Jul; 1(7):e198. PubMed ID: 34286910
[TBL] [Abstract][Full Text] [Related]
18. Computational Analysis of Hi-C Data.
Forcato M; Bicciato S
Methods Mol Biol; 2021; 2157():103-125. PubMed ID: 32820401
[TBL] [Abstract][Full Text] [Related]
19. DamC reveals principles of chromatin folding in vivo without crosslinking and ligation.
Redolfi J; Zhan Y; Valdes-Quezada C; Kryzhanovska M; Guerreiro I; Iesmantavicius V; Pollex T; Grand RS; Mulugeta E; Kind J; Tiana G; Smallwood SA; de Laat W; Giorgetti L
Nat Struct Mol Biol; 2019 Jun; 26(6):471-480. PubMed ID: 31133702
[TBL] [Abstract][Full Text] [Related]
20. Probing long-range interactions by extracting free energies from genome-wide chromosome conformation capture data.
Saberi S; Farré P; Cuvier O; Emberly E
BMC Bioinformatics; 2015 May; 16():171. PubMed ID: 26001583
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
