BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

184 related articles for article (PubMed ID: 29709556)

  • 1. GoldCLIP: Gel-omitted Ligation-dependent CLIP.
    Gu J; Wang M; Yang Y; Qiu D; Zhang Y; Ma J; Zhou Y; Hannon GJ; Yu Y
    Genomics Proteomics Bioinformatics; 2018 Apr; 16(2):136-143. PubMed ID: 29709556
    [TBL] [Abstract][Full Text] [Related]  

  • 2. PAR-CliP--a method to identify transcriptome-wide the binding sites of RNA binding proteins.
    Hafner M; Landthaler M; Burger L; Khorshid M; Hausser J; Berninger P; Rothballer A; Ascano M; Jungkamp AC; Munschauer M; Ulrich A; Wardle GS; Dewell S; Zavolan M; Tuschl T
    J Vis Exp; 2010 Jul; (41):. PubMed ID: 20644507
    [TBL] [Abstract][Full Text] [Related]  

  • 3. PAR-CLIP and streamlined small RNA cDNA library preparation protocol for the identification of RNA binding protein target sites.
    Benhalevy D; McFarland HL; Sarshad AA; Hafner M
    Methods; 2017 Apr; 118-119():41-49. PubMed ID: 27871973
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Insights into the design and interpretation of iCLIP experiments.
    Haberman N; Huppertz I; Attig J; König J; Wang Z; Hauer C; Hentze MW; Kulozik AE; Le Hir H; Curk T; Sibley CR; Zarnack K; Ule J
    Genome Biol; 2017 Jan; 18(1):7. PubMed ID: 28093074
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Transcriptome-wide Identification of RNA-binding Protein Binding Sites Using Photoactivatable-Ribonucleoside-Enhanced Crosslinking Immunoprecipitation (PAR-CLIP).
    Maatz H; Kolinski M; Hubner N; Landthaler M
    Curr Protoc Mol Biol; 2017 Apr; 118():27.6.1-27.6.19. PubMed ID: 28369676
    [TBL] [Abstract][Full Text] [Related]  

  • 6. PAR-CLIP (Photoactivatable Ribonucleoside-Enhanced Crosslinking and Immunoprecipitation): a step-by-step protocol to the transcriptome-wide identification of binding sites of RNA-binding proteins.
    Spitzer J; Hafner M; Landthaler M; Ascano M; Farazi T; Wardle G; Nusbaum J; Khorshid M; Burger L; Zavolan M; Tuschl T
    Methods Enzymol; 2014; 539():113-61. PubMed ID: 24581442
    [TBL] [Abstract][Full Text] [Related]  

  • 7. iCLIP--transcriptome-wide mapping of protein-RNA interactions with individual nucleotide resolution.
    Konig J; Zarnack K; Rot G; Curk T; Kayikci M; Zupan B; Turner DJ; Luscombe NM; Ule J
    J Vis Exp; 2011 Apr; (50):. PubMed ID: 21559008
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Analysis of the nucleocytoplasmic shuttling RNA-binding protein HNRNPU using optimized HITS-CLIP method.
    Yugami M; Okano H; Nakanishi A; Yano M
    PLoS One; 2020; 15(4):e0231450. PubMed ID: 32302342
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Optimization of PAR-CLIP for transcriptome-wide identification of binding sites of RNA-binding proteins.
    Garzia A; Meyer C; Morozov P; Sajek M; Tuschl T
    Methods; 2017 Apr; 118-119():24-40. PubMed ID: 27765618
    [TBL] [Abstract][Full Text] [Related]  

  • 10. A non-radioactive, improved PAR-CLIP and small RNA cDNA library preparation protocol.
    Anastasakis DG; Jacob A; Konstantinidou P; Meguro K; Claypool D; Cekan P; Haase AD; Hafner M
    Nucleic Acids Res; 2021 May; 49(8):e45. PubMed ID: 33503264
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Genome-Wide Profiling of RNA-Protein Interactions Using CLIP-Seq.
    Stork C; Zheng S
    Methods Mol Biol; 2016; 1421():137-51. PubMed ID: 26965263
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Transcriptome-Wide Mapping of Protein-RNA Interactions.
    Bi X; Shen X
    Methods Mol Biol; 2020; 2161():161-173. PubMed ID: 32681512
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Chemical crosslinking enhances RNA immunoprecipitation for efficient identification of binding sites of proteins that photo-crosslink poorly with RNA.
    Patton RD; Sanjeev M; Woodward LA; Mabin JW; Bundschuh R; Singh G
    RNA; 2020 Sep; 26(9):1216-1233. PubMed ID: 32467309
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Optimized infrared photoactivatable ribonucleoside-enhanced crosslinking and immunoprecipitation (IR-PAR-CLIP) protocol identifies novel IGF2BP3-interacting RNAs in colon cancer cells.
    Anisimova AS; Karagöz GE
    RNA; 2023 Nov; 29(11):1818-1836. PubMed ID: 37582618
    [TBL] [Abstract][Full Text] [Related]  

  • 15. PAR-CLIP: A Method for Transcriptome-Wide Identification of RNA Binding Protein Interaction Sites.
    Danan C; Manickavel S; Hafner M
    Methods Mol Biol; 2022; 2404():167-188. PubMed ID: 34694609
    [TBL] [Abstract][Full Text] [Related]  

  • 16. CLIP: crosslinking and immunoprecipitation of in vivo RNA targets of RNA-binding proteins.
    Jensen KB; Darnell RB
    Methods Mol Biol; 2008; 488():85-98. PubMed ID: 18982285
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Cross-linking and immunoprecipitation of nuclear RNA-binding proteins.
    Li Q; Uemura Y; Kawahara Y
    Methods Mol Biol; 2015; 1262():247-63. PubMed ID: 25555586
    [TBL] [Abstract][Full Text] [Related]  

  • 18. SpyCLIP: an easy-to-use and high-throughput compatible CLIP platform for the characterization of protein-RNA interactions with high accuracy.
    Zhao Y; Zhang Y; Teng Y; Liu K; Liu Y; Li W; Wu L
    Nucleic Acids Res; 2019 Apr; 47(6):e33. PubMed ID: 30715466
    [TBL] [Abstract][Full Text] [Related]  

  • 19. PAR-CLIP: A Method for Transcriptome-Wide Identification of RNA Binding Protein Interaction Sites.
    Danan C; Manickavel S; Hafner M
    Methods Mol Biol; 2016; 1358():153-73. PubMed ID: 26463383
    [TBL] [Abstract][Full Text] [Related]  

  • 20. PAR-CLIP for Discovering Target Sites of RNA-Binding Proteins.
    Garzia A; Morozov P; Sajek M; Meyer C; Tuschl T
    Methods Mol Biol; 2018; 1720():55-75. PubMed ID: 29236251
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 10.