BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

326 related articles for article (PubMed ID: 29710372)

  • 1. A matter of phylogenetic scale: Distinguishing incomplete lineage sorting from lateral gene transfer as the cause of gene tree discord in recent versus deep diversification histories.
    Knowles LL; Huang H; Sukumaran J; Smith SA
    Am J Bot; 2018 Mar; 105(3):376-384. PubMed ID: 29710372
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Applying species-tree analyses to deep phylogenetic histories: challenges and potential suggested from a survey of empirical phylogenetic studies.
    Lanier HC; Knowles LL
    Mol Phylogenet Evol; 2015 Feb; 83():191-9. PubMed ID: 25450097
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Maximum likelihood estimates of species trees: how accuracy of phylogenetic inference depends upon the divergence history and sampling design.
    McCormack JE; Huang H; Knowles LL
    Syst Biol; 2009 Oct; 58(5):501-8. PubMed ID: 20525604
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Estimating species phylogeny from gene-tree probabilities despite incomplete lineage sorting: an example from Melanoplus grasshoppers.
    Carstens BC; Knowles LL
    Syst Biol; 2007 Jun; 56(3):400-11. PubMed ID: 17520504
    [TBL] [Abstract][Full Text] [Related]  

  • 5. To Include or Not to Include: The Impact of Gene Filtering on Species Tree Estimation Methods.
    Molloy EK; Warnow T
    Syst Biol; 2018 Mar; 67(2):285-303. PubMed ID: 29029338
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Sources of error inherent in species-tree estimation: impact of mutational and coalescent effects on accuracy and implications for choosing among different methods.
    Huang H; He Q; Kubatko LS; Knowles LL
    Syst Biol; 2010 Oct; 59(5):573-83. PubMed ID: 20833951
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Identifying a species tree subject to random lateral gene transfer.
    Steel M; Linz S; Huson DH; Sanderson MJ
    J Theor Biol; 2013 Apr; 322():81-93. PubMed ID: 23340439
    [TBL] [Abstract][Full Text] [Related]  

  • 8. What is the danger of the anomaly zone for empirical phylogenetics?
    Huang H; Knowles LL
    Syst Biol; 2009 Oct; 58(5):527-36. PubMed ID: 20525606
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Partitioned coalescence support reveals biases in species-tree methods and detects gene trees that determine phylogenomic conflicts.
    Gatesy J; Sloan DB; Warren JM; Baker RH; Simmons MP; Springer MS
    Mol Phylogenet Evol; 2019 Oct; 139():106539. PubMed ID: 31226465
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Estimating phylogenetic relationships despite discordant gene trees across loci: the species tree of a diverse species group of feather mites (Acari: Proctophyllodidae).
    Knowles LL; Klimov PB
    Parasitology; 2011 Nov; 138(13):1750-9. PubMed ID: 21554840
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Detecting hybrid speciation in the presence of incomplete lineage sorting using gene tree incongruence: a model.
    Meng C; Kubatko LS
    Theor Popul Biol; 2009 Feb; 75(1):35-45. PubMed ID: 19038278
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Estimating optimal species trees from incomplete gene trees under deep coalescence.
    Bayzid MS; Warnow T
    J Comput Biol; 2012 Jun; 19(6):591-605. PubMed ID: 22697236
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Resolving Deep Nodes in an Ancient Radiation of Neotropical Fishes in the Presence of Conflicting Signals from Incomplete Lineage Sorting.
    Alda F; Tagliacollo VA; Bernt MJ; Waltz BT; Ludt WB; Faircloth BC; Alfaro ME; Albert JS; Chakrabarty P
    Syst Biol; 2019 Jul; 68(4):573-593. PubMed ID: 30521024
    [TBL] [Abstract][Full Text] [Related]  

  • 14. From gene trees to species trees II: species tree inference by minimizing deep coalescence events.
    Zhang L
    IEEE/ACM Trans Comput Biol Bioinform; 2011; 8(6):1685-91. PubMed ID: 21576759
    [TBL] [Abstract][Full Text] [Related]  

  • 15. On the Robustness to Gene Tree Estimation Error (or lack thereof) of Coalescent-Based Species Tree Methods.
    Roch S; Warnow T
    Syst Biol; 2015 Jul; 64(4):663-76. PubMed ID: 25813358
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Expected pairwise congruence among gene trees under the coalescent model.
    Tian Y; Kubatko LS
    Mol Phylogenet Evol; 2017 Jan; 106():144-150. PubMed ID: 27693467
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Bayesian-Weighted Triplet and Quartet Methods for Species Tree Inference.
    Richards A; Kubatko L
    Bull Math Biol; 2021 Jul; 83(9):93. PubMed ID: 34297209
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Coestimating Reticulate Phylogenies and Gene Trees from Multilocus Sequence Data.
    Wen D; Nakhleh L
    Syst Biol; 2018 May; 67(3):439-457. PubMed ID: 29088409
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Multi-locus species tree for the Amazonian peacock basses (Cichlidae: Cichla): emergent phylogenetic signal despite limited nuclear variation.
    Willis SC; Farias IP; Ortí G
    Mol Phylogenet Evol; 2013 Dec; 69(3):479-90. PubMed ID: 23939135
    [TBL] [Abstract][Full Text] [Related]  

  • 20. The gene tree delusion.
    Springer MS; Gatesy J
    Mol Phylogenet Evol; 2016 Jan; 94(Pt A):1-33. PubMed ID: 26238460
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 17.