199 related articles for article (PubMed ID: 29713081)
1. Picky comprehensively detects high-resolution structural variants in nanopore long reads.
Gong L; Wong CH; Cheng WC; Tjong H; Menghi F; Ngan CY; Liu ET; Wei CL
Nat Methods; 2018 Jun; 15(6):455-460. PubMed ID: 29713081
[TBL] [Abstract][Full Text] [Related]
2. Mapping and phasing of structural variation in patient genomes using nanopore sequencing.
Cretu Stancu M; van Roosmalen MJ; Renkens I; Nieboer MM; Middelkamp S; de Ligt J; Pregno G; Giachino D; Mandrile G; Espejo Valle-Inclan J; Korzelius J; de Bruijn E; Cuppen E; Talkowski ME; Marschall T; de Ridder J; Kloosterman WP
Nat Commun; 2017 Nov; 8(1):1326. PubMed ID: 29109544
[TBL] [Abstract][Full Text] [Related]
3. Comparison of structural variants detected by PacBio-CLR and ONT sequencing in pear.
Liu Y; Zhang M; Wang R; Li B; Jiang Y; Sun M; Chang Y; Wu J
BMC Genomics; 2022 Dec; 23(1):830. PubMed ID: 36517766
[TBL] [Abstract][Full Text] [Related]
4. HQAlign: aligning nanopore reads for SV detection using current-level modeling.
Joshi D; Diggavi S; Chaisson MJP; Kannan S
Bioinformatics; 2023 Oct; 39(10):. PubMed ID: 37738608
[TBL] [Abstract][Full Text] [Related]
5. Whole-genome sequencing with long reads reveals complex structure and origin of structural variation in human genetic variations and somatic mutations in cancer.
Fujimoto A; Wong JH; Yoshii Y; Akiyama S; Tanaka A; Yagi H; Shigemizu D; Nakagawa H; Mizokami M; Shimada M
Genome Med; 2021 Apr; 13(1):65. PubMed ID: 33910608
[TBL] [Abstract][Full Text] [Related]
6. Oxford Nanopore and Bionano Genomics technologies evaluation for plant structural variation detection.
Canaguier A; Guilbaud R; Denis E; Magdelenat G; Belser C; Istace B; Cruaud C; Wincker P; Le Paslier MC; Faivre-Rampant P; Barbe V
BMC Genomics; 2022 Apr; 23(1):317. PubMed ID: 35448948
[TBL] [Abstract][Full Text] [Related]
7. Combined use of Oxford Nanopore and Illumina sequencing yields insights into soybean structural variation biology.
Lemay MA; Sibbesen JA; Torkamaneh D; Hamel J; Levesque RC; Belzile F
BMC Biol; 2022 Feb; 20(1):53. PubMed ID: 35197050
[TBL] [Abstract][Full Text] [Related]
8. Initial Analysis of Structural Variation Detections in Cattle Using Long-Read Sequencing Methods.
Gao Y; Ma L; Liu GE
Genes (Basel); 2022 May; 13(5):. PubMed ID: 35627213
[TBL] [Abstract][Full Text] [Related]
9. LinkedSV for detection of mosaic structural variants from linked-read exome and genome sequencing data.
Fang L; Kao C; Gonzalez MV; Mafra FA; Pellegrino da Silva R; Li M; Wenzel SS; Wimmer K; Hakonarson H; Wang K
Nat Commun; 2019 Dec; 10(1):5585. PubMed ID: 31811119
[TBL] [Abstract][Full Text] [Related]
10. Genome-wide reconstruction of complex structural variants using read clouds.
Spies N; Weng Z; Bishara A; McDaniel J; Catoe D; Zook JM; Salit M; West RB; Batzoglou S; Sidow A
Nat Methods; 2017 Sep; 14(9):915-920. PubMed ID: 28714986
[TBL] [Abstract][Full Text] [Related]
11. Long-Read Whole-Genome Sequencing Using a Nanopore Sequencer and Detection of Structural Variants in Cancer Genomes.
Haga Y; Sakamoto Y; Arai M; Suzuki Y; Suzuki A
Methods Mol Biol; 2023; 2632():177-189. PubMed ID: 36781729
[TBL] [Abstract][Full Text] [Related]
12. Nanopore sequencing detects structural variants in cancer.
Norris AL; Workman RE; Fan Y; Eshleman JR; Timp W
Cancer Biol Ther; 2016; 17(3):246-53. PubMed ID: 26787508
[TBL] [Abstract][Full Text] [Related]
13. Precise characterization of somatic complex structural variations from tumor/control paired long-read sequencing data with nanomonsv.
Shiraishi Y; Koya J; Chiba K; Okada A; Arai Y; Saito Y; Shibata T; Kataoka K
Nucleic Acids Res; 2023 Aug; 51(14):e74. PubMed ID: 37336583
[TBL] [Abstract][Full Text] [Related]
14. SVsearcher: A more accurate structural variation detection method in long read data.
Zheng Y; Shang X; Sung WK
Comput Biol Med; 2023 May; 158():106843. PubMed ID: 37019014
[TBL] [Abstract][Full Text] [Related]
15. Small polymorphisms are a source of ancestral bias in structural variant breakpoint placement.
Audano PA; Beck CR
Genome Res; 2024 Feb; 34(1):7-19. PubMed ID: 38176712
[TBL] [Abstract][Full Text] [Related]
16. Localized assembly for long reads enables genome-wide analysis of repetitive regions at single-base resolution in human genomes.
Ikemoto K; Fujimoto H; Fujimoto A
Hum Genomics; 2023 Mar; 17(1):21. PubMed ID: 36895025
[TBL] [Abstract][Full Text] [Related]
17. Characterization of structural variants with single molecule and hybrid sequencing approaches.
Ritz A; Bashir A; Sindi S; Hsu D; Hajirasouliha I; Raphael BJ
Bioinformatics; 2014 Dec; 30(24):3458-66. PubMed ID: 25355789
[TBL] [Abstract][Full Text] [Related]
18. Comprehensive analysis of structural variants in breast cancer genomes using single-molecule sequencing.
Aganezov S; Goodwin S; Sherman RM; Sedlazeck FJ; Arun G; Bhatia S; Lee I; Kirsche M; Wappel R; Kramer M; Kostroff K; Spector DL; Timp W; McCombie WR; Schatz MC
Genome Res; 2020 Sep; 30(9):1258-1273. PubMed ID: 32887686
[TBL] [Abstract][Full Text] [Related]
19. SVLR: Genome Structural Variant Detection Using Long-Read Sequencing Data.
Gu W; Zhou A; Wang L; Sun S; Cui X; Zhu D
J Comput Biol; 2021 Aug; 28(8):774-788. PubMed ID: 33973820
[TBL] [Abstract][Full Text] [Related]
20. Are we there yet? Benchmarking low-coverage nanopore long-read sequencing for the assembling of mitochondrial genomes using the vulnerable silky shark Carcharhinus falciformis.
Baeza JA; García-De León FJ
BMC Genomics; 2022 Apr; 23(1):320. PubMed ID: 35459089
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
