574 related articles for article (PubMed ID: 29718330)
1. DynaMut: predicting the impact of mutations on protein conformation, flexibility and stability.
Rodrigues CH; Pires DE; Ascher DB
Nucleic Acids Res; 2018 Jul; 46(W1):W350-W355. PubMed ID: 29718330
[TBL] [Abstract][Full Text] [Related]
2. DynaMut2: Assessing changes in stability and flexibility upon single and multiple point missense mutations.
Rodrigues CHM; Pires DEV; Ascher DB
Protein Sci; 2021 Jan; 30(1):60-69. PubMed ID: 32881105
[TBL] [Abstract][Full Text] [Related]
3. Exploring Protein Supersecondary Structure Through Changes in Protein Folding, Stability, and Flexibility.
Pires DEV; Rodrigues CHM; Albanaz ATS; Karmakar M; Myung Y; Xavier J; Michanetzi EM; Portelli S; Ascher DB
Methods Mol Biol; 2019; 1958():173-185. PubMed ID: 30945219
[TBL] [Abstract][Full Text] [Related]
4. CABS-flex 2.0: a web server for fast simulations of flexibility of protein structures.
Kuriata A; Gierut AM; Oleniecki T; Ciemny MP; Kolinski A; Kurcinski M; Kmiecik S
Nucleic Acids Res; 2018 Jul; 46(W1):W338-W343. PubMed ID: 29762700
[TBL] [Abstract][Full Text] [Related]
5. mCSM-membrane: predicting the effects of mutations on transmembrane proteins.
Pires DEV; Rodrigues CHM; Ascher DB
Nucleic Acids Res; 2020 Jul; 48(W1):W147-W153. PubMed ID: 32469063
[TBL] [Abstract][Full Text] [Related]
6. mCSM-PPI2: predicting the effects of mutations on protein-protein interactions.
Rodrigues CHM; Myung Y; Pires DEV; Ascher DB
Nucleic Acids Res; 2019 Jul; 47(W1):W338-W344. PubMed ID: 31114883
[TBL] [Abstract][Full Text] [Related]
7. ENCoM server: exploring protein conformational space and the effect of mutations on protein function and stability.
Frappier V; Chartier M; Najmanovich RJ
Nucleic Acids Res; 2015 Jul; 43(W1):W395-400. PubMed ID: 25883149
[TBL] [Abstract][Full Text] [Related]
8. Applications of Normal Mode Analysis Methods in Computational Protein Design.
Frappier V; Chartier M; Najmanovich R
Methods Mol Biol; 2017; 1529():203-214. PubMed ID: 27914052
[TBL] [Abstract][Full Text] [Related]
9. Toward rational protein crystallization: A Web server for the design of crystallizable protein variants.
Goldschmidt L; Cooper DR; Derewenda ZS; Eisenberg D
Protein Sci; 2007 Aug; 16(8):1569-76. PubMed ID: 17656576
[TBL] [Abstract][Full Text] [Related]
10. Kinact: a computational approach for predicting activating missense mutations in protein kinases.
Rodrigues CH; Ascher DB; Pires DE
Nucleic Acids Res; 2018 Jul; 46(W1):W127-W132. PubMed ID: 29788456
[TBL] [Abstract][Full Text] [Related]
11. SCRATCH: a protein structure and structural feature prediction server.
Cheng J; Randall AZ; Sweredoski MJ; Baldi P
Nucleic Acids Res; 2005 Jul; 33(Web Server issue):W72-6. PubMed ID: 15980571
[TBL] [Abstract][Full Text] [Related]
12. mmCSM-PPI: predicting the effects of multiple point mutations on protein-protein interactions.
Rodrigues CHM; Pires DEV; Ascher DB
Nucleic Acids Res; 2021 Jul; 49(W1):W417-W424. PubMed ID: 33893812
[TBL] [Abstract][Full Text] [Related]
13. TKSA-MC: A web server for rational mutation through the optimization of protein charge interactions.
Contessoto VG; de Oliveira VM; Fernandes BR; Slade GG; Leite VBP
Proteins; 2018 Nov; 86(11):1184-1188. PubMed ID: 30218467
[TBL] [Abstract][Full Text] [Related]
14. CSM-lig: a web server for assessing and comparing protein-small molecule affinities.
Pires DE; Ascher DB
Nucleic Acids Res; 2016 Jul; 44(W1):W557-61. PubMed ID: 27151202
[TBL] [Abstract][Full Text] [Related]
15. AGGRESCAN3D (A3D): server for prediction of aggregation properties of protein structures.
Zambrano R; Jamroz M; Szczasiuk A; Pujols J; Kmiecik S; Ventura S
Nucleic Acids Res; 2015 Jul; 43(W1):W306-13. PubMed ID: 25883144
[TBL] [Abstract][Full Text] [Related]
16. mCSM-AB2: guiding rational antibody design using graph-based signatures.
Myung Y; Rodrigues CHM; Ascher DB; Pires DEV
Bioinformatics; 2020 Mar; 36(5):1453-1459. PubMed ID: 31665262
[TBL] [Abstract][Full Text] [Related]
17. Delineating the effect of mutations on the conformational dynamics of N-terminal domain of TDP-43.
Kumar V; Pandey P; Idrees D; Prakash A; Lynn AM
Biophys Chem; 2019 Jul; 250():106174. PubMed ID: 31035038
[TBL] [Abstract][Full Text] [Related]
18. PoPMuSiC 2.1: a web server for the estimation of protein stability changes upon mutation and sequence optimality.
Dehouck Y; Kwasigroch JM; Gilis D; Rooman M
BMC Bioinformatics; 2011 May; 12():151. PubMed ID: 21569468
[TBL] [Abstract][Full Text] [Related]
19. UNRES server for physics-based coarse-grained simulations and prediction of protein structure, dynamics and thermodynamics.
Czaplewski C; Karczynska A; Sieradzan AK; Liwo A
Nucleic Acids Res; 2018 Jul; 46(W1):W304-W309. PubMed ID: 29718313
[TBL] [Abstract][Full Text] [Related]
20. mCSM-NA: predicting the effects of mutations on protein-nucleic acids interactions.
Pires DEV; Ascher DB
Nucleic Acids Res; 2017 Jul; 45(W1):W241-W246. PubMed ID: 28383703
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]