BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

328 related articles for article (PubMed ID: 29733404)

  • 1. SPAR: small RNA-seq portal for analysis of sequencing experiments.
    Kuksa PP; Amlie-Wolf A; Katanic Ž; Valladares O; Wang LS; Leung YY
    Nucleic Acids Res; 2018 Jul; 46(W1):W36-W42. PubMed ID: 29733404
    [TBL] [Abstract][Full Text] [Related]  

  • 2. DASHR 2.0: integrated database of human small non-coding RNA genes and mature products.
    Kuksa PP; Amlie-Wolf A; Katanić Ž; Valladares O; Wang LS; Leung YY
    Bioinformatics; 2019 Mar; 35(6):1033-1039. PubMed ID: 30668832
    [TBL] [Abstract][Full Text] [Related]  

  • 3. DASHR: database of small human noncoding RNAs.
    Leung YY; Kuksa PP; Amlie-Wolf A; Valladares O; Ungar LH; Kannan S; Gregory BD; Wang LS
    Nucleic Acids Res; 2016 Jan; 44(D1):D216-22. PubMed ID: 26553799
    [TBL] [Abstract][Full Text] [Related]  

  • 4. FlaiMapper: computational annotation of small ncRNA-derived fragments using RNA-seq high-throughput data.
    Hoogstrate Y; Jenster G; Martens-Uzunova ES
    Bioinformatics; 2015 Mar; 31(5):665-73. PubMed ID: 25338717
    [TBL] [Abstract][Full Text] [Related]  

  • 5. YM500v3: a database for small RNA sequencing in human cancer research.
    Chung IF; Chang SJ; Chen CY; Liu SH; Li CY; Chan CH; Shih CC; Cheng WC
    Nucleic Acids Res; 2017 Jan; 45(D1):D925-D931. PubMed ID: 27899625
    [TBL] [Abstract][Full Text] [Related]  

  • 6. iSeq: Web-Based RNA-seq Data Analysis and Visualization.
    Zhang C; Fan C; Gan J; Zhu P; Kong L; Li C
    Methods Mol Biol; 2018; 1754():167-181. PubMed ID: 29536443
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Computer-assisted annotation of small RNA transcriptomes.
    Ortogero N; Hennig GW; Luong D; Yan W
    Methods Mol Biol; 2015; 1218():353-64. PubMed ID: 25319663
    [TBL] [Abstract][Full Text] [Related]  

  • 8. QuickRNASeq lifts large-scale RNA-seq data analyses to the next level of automation and interactive visualization.
    Zhao S; Xi L; Quan J; Xi H; Zhang Y; von Schack D; Vincent M; Zhang B
    BMC Genomics; 2016 Jan; 17():39. PubMed ID: 26747388
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Transcriptator: An Automated Computational Pipeline to Annotate Assembled Reads and Identify Non Coding RNA.
    Tripathi KP; Evangelista D; Zuccaro A; Guarracino MR
    PLoS One; 2015; 10(11):e0140268. PubMed ID: 26581084
    [TBL] [Abstract][Full Text] [Related]  

  • 10. mmannot: How to improve small-RNA annotation?
    Zytnicki M; Gaspin C
    PLoS One; 2020; 15(5):e0231738. PubMed ID: 32463818
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Small noncoding RNA discovery and profiling with sRNAtools based on high-throughput sequencing.
    Liu Q; Ding C; Lang X; Guo G; Chen J; Su X
    Brief Bioinform; 2021 Jan; 22(1):463-473. PubMed ID: 31885040
    [TBL] [Abstract][Full Text] [Related]  

  • 12. unitas: the universal tool for annotation of small RNAs.
    Gebert D; Hewel C; Rosenkranz D
    BMC Genomics; 2017 Aug; 18(1):644. PubMed ID: 28830358
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Computer-assisted annotation of murine Sertoli cell small RNA transcriptome.
    Ortogero N; Hennig GW; Langille C; Ro S; McCarrey JR; Yan W
    Biol Reprod; 2013 Jan; 88(1):3. PubMed ID: 23136297
    [TBL] [Abstract][Full Text] [Related]  

  • 14. CANEapp: a user-friendly application for automated next generation transcriptomic data analysis.
    Velmeshev D; Lally P; Magistri M; Faghihi MA
    BMC Genomics; 2016 Jan; 17():49. PubMed ID: 26758513
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Data Analysis in Single-Cell Transcriptome Sequencing.
    Gao S
    Methods Mol Biol; 2018; 1754():311-326. PubMed ID: 29536451
    [TBL] [Abstract][Full Text] [Related]  

  • 16. tRF2Cancer: A web server to detect tRNA-derived small RNA fragments (tRFs) and their expression in multiple cancers.
    Zheng LL; Xu WL; Liu S; Sun WJ; Li JH; Wu J; Yang JH; Qu LH
    Nucleic Acids Res; 2016 Jul; 44(W1):W185-93. PubMed ID: 27179031
    [TBL] [Abstract][Full Text] [Related]  

  • 17. The UEA Small RNA Workbench: A Suite of Computational Tools for Small RNA Analysis.
    Mohorianu I; Stocks MB; Applegate CS; Folkes L; Moulton V
    Methods Mol Biol; 2017; 1580():193-224. PubMed ID: 28439835
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Single Cell Explorer, collaboration-driven tools to leverage large-scale single cell RNA-seq data.
    Feng D; Whitehurst CE; Shan D; Hill JD; Yue YG
    BMC Genomics; 2019 Aug; 20(1):676. PubMed ID: 31455220
    [TBL] [Abstract][Full Text] [Related]  

  • 19. deepBase v2.0: identification, expression, evolution and function of small RNAs, LncRNAs and circular RNAs from deep-sequencing data.
    Zheng LL; Li JH; Wu J; Sun WJ; Liu S; Wang ZL; Zhou H; Yang JH; Qu LH
    Nucleic Acids Res; 2016 Jan; 44(D1):D196-202. PubMed ID: 26590255
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Methods for Annotation and Validation of Circular RNAs from RNAseq Data.
    Sharma D; Sehgal P; Hariprakash J; Sivasubbu S; Scaria V
    Methods Mol Biol; 2019; 1912():55-76. PubMed ID: 30635890
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 17.