These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.
116 related articles for article (PubMed ID: 29741581)
1. Jwalk and MNXL web server: model validation using restraints from crosslinking mass spectrometry. Bullock JMA; Thalassinos K; Topf M Bioinformatics; 2018 Oct; 34(20):3584-3585. PubMed ID: 29741581 [TBL] [Abstract][Full Text] [Related]
2. The Importance of Non-accessible Crosslinks and Solvent Accessible Surface Distance in Modeling Proteins with Restraints From Crosslinking Mass Spectrometry. Matthew Allen Bullock J; Schwab J; Thalassinos K; Topf M Mol Cell Proteomics; 2016 Jul; 15(7):2491-500. PubMed ID: 27150526 [TBL] [Abstract][Full Text] [Related]
3. Modeling Protein Complexes Using Restraints from Crosslinking Mass Spectrometry. Bullock JMA; Sen N; Thalassinos K; Topf M Structure; 2018 Jul; 26(7):1015-1024.e2. PubMed ID: 29804821 [TBL] [Abstract][Full Text] [Related]
4. Quantitative Structural Interpretation of Protein Crosslinks. Filella-Merce I; Bardiaux B; Nilges M; Bouvier G Structure; 2020 Jan; 28(1):75-82.e4. PubMed ID: 31753619 [TBL] [Abstract][Full Text] [Related]
5. RIBFIND: a web server for identifying rigid bodies in protein structures and to aid flexible fitting into cryo EM maps. Pandurangan AP; Topf M Bioinformatics; 2012 Sep; 28(18):2391-3. PubMed ID: 22796953 [TBL] [Abstract][Full Text] [Related]
6. FILTREST3D: discrimination of structural models using restraints from experimental data. Gajda MJ; Tuszynska I; Kaczor M; Bakulina AY; Bujnicki JM Bioinformatics; 2010 Dec; 26(23):2986-7. PubMed ID: 20956242 [TBL] [Abstract][Full Text] [Related]
7. CHOYCE: a web server for constrained homology modelling with cryoEM maps. Rawi R; Whitmore L; Topf M Bioinformatics; 2010 Jul; 26(13):1673-4. PubMed ID: 20444836 [TBL] [Abstract][Full Text] [Related]
8. MetCCS predictor: a web server for predicting collision cross-section values of metabolites in ion mobility-mass spectrometry based metabolomics. Zhou Z; Xiong X; Zhu ZJ Bioinformatics; 2017 Jul; 33(14):2235-2237. PubMed ID: 28334295 [TBL] [Abstract][Full Text] [Related]
9. Combining Information from Crosslinks and Monolinks in the Modeling of Protein Structures. Sinnott M; Malhotra S; Madhusudhan MS; Thalassinos K; Topf M Structure; 2020 Sep; 28(9):1061-1070.e3. PubMed ID: 32531204 [TBL] [Abstract][Full Text] [Related]
10. Tightening the Crosslinking Distance Restraints for Better Resolution of Protein Structure and Dynamics. Gong Z; Ye SX; Tang C Structure; 2020 Oct; 28(10):1160-1167.e3. PubMed ID: 32763142 [TBL] [Abstract][Full Text] [Related]
11. Increased sensitivity with automated validation of XL-MS cleavable peptide crosslinks. Keller A; Chavez JD; Bruce JE Bioinformatics; 2019 Mar; 35(5):895-897. PubMed ID: 30137231 [TBL] [Abstract][Full Text] [Related]
12. TopoLink: evaluation of structural models using chemical crosslinking distance constraints. Ferrari AJR; Clasen MA; Kurt L; Carvalho PC; Gozzo FC; Martínez L Bioinformatics; 2019 Sep; 35(17):3169-3170. PubMed ID: 30629147 [TBL] [Abstract][Full Text] [Related]
13. Xwalk: computing and visualizing distances in cross-linking experiments. Kahraman A; Malmström L; Aebersold R Bioinformatics; 2011 Aug; 27(15):2163-4. PubMed ID: 21666267 [TBL] [Abstract][Full Text] [Related]
14. XLmap: an R package to visualize and score protein structure models based on sites of protein cross-linking. Schweppe DK; Chavez JD; Bruce JE Bioinformatics; 2016 Jan; 32(2):306-8. PubMed ID: 26411867 [TBL] [Abstract][Full Text] [Related]
15. Accounting for pairwise distance restraints in FFT-based protein-protein docking. Xia B; Vajda S; Kozakov D Bioinformatics; 2016 Nov; 32(21):3342-3344. PubMed ID: 27357172 [TBL] [Abstract][Full Text] [Related]
16. Automated structure modeling of large protein assemblies using crosslinks as distance restraints. Ferber M; Kosinski J; Ori A; Rashid UJ; Moreno-Morcillo M; Simon B; Bouvier G; Batista PR; Müller CW; Beck M; Nilges M Nat Methods; 2016 Jun; 13(6):515-20. PubMed ID: 27111507 [TBL] [Abstract][Full Text] [Related]
17. Dscam1 web server: online prediction of Dscam1 self- and hetero-affinity. Marini S; Nazzicari N; Biscarini F; Wang GZ Bioinformatics; 2017 Jun; 33(12):1879-1880. PubMed ID: 28137710 [TBL] [Abstract][Full Text] [Related]
18. PyXlinkViewer: A flexible tool for visualization of protein chemical crosslinking data within the PyMOL molecular graphics system. Schiffrin B; Radford SE; Brockwell DJ; Calabrese AN Protein Sci; 2020 Aug; 29(8):1851-1857. PubMed ID: 32557917 [TBL] [Abstract][Full Text] [Related]
19. Protein structure dynamics by crosslinking mass spectrometry. Chen ZA; Rappsilber J Curr Opin Struct Biol; 2023 Jun; 80():102599. PubMed ID: 37104977 [TBL] [Abstract][Full Text] [Related]
20. The PPI3D web server for searching, analyzing and modeling protein-protein interactions in the context of 3D structures. Dapkunas J; Timinskas A; Olechnovic K; Margelevicius M; Diciunas R; Venclovas C Bioinformatics; 2017 Mar; 33(6):935-937. PubMed ID: 28011769 [TBL] [Abstract][Full Text] [Related] [Next] [New Search]