199 related articles for article (PubMed ID: 29761462)
1. Navigating Xenbase: An Integrated Xenopus Genomics and Gene Expression Database.
James-Zorn C; Ponferrada V; Fisher ME; Burns K; Fortriede J; Segerdell E; Karimi K; Lotay V; Wang DZ; Chu S; Pells T; Wang Y; Vize PD; Zorn A
Methods Mol Biol; 2018; 1757():251-305. PubMed ID: 29761462
[TBL] [Abstract][Full Text] [Related]
2. Xenbase: a genomic, epigenomic and transcriptomic model organism database.
Karimi K; Fortriede JD; Lotay VS; Burns KA; Wang DZ; Fisher ME; Pells TJ; James-Zorn C; Wang Y; Ponferrada VG; Chu S; Chaturvedi P; Zorn AM; Vize PD
Nucleic Acids Res; 2018 Jan; 46(D1):D861-D868. PubMed ID: 29059324
[TBL] [Abstract][Full Text] [Related]
3. Xenbase: a Xenopus biology and genomics resource.
Bowes JB; Snyder KA; Segerdell E; Gibb R; Jarabek C; Noumen E; Pollet N; Vize PD
Nucleic Acids Res; 2008 Jan; 36(Database issue):D761-7. PubMed ID: 17984085
[TBL] [Abstract][Full Text] [Related]
4. Xenbase: gene expression and improved integration.
Bowes JB; Snyder KA; Segerdell E; Jarabek CJ; Azam K; Zorn AM; Vize PD
Nucleic Acids Res; 2010 Jan; 38(Database issue):D607-12. PubMed ID: 19884130
[TBL] [Abstract][Full Text] [Related]
5. Xenbase: Core features, data acquisition, and data processing.
James-Zorn C; Ponferrada VG; Burns KA; Fortriede JD; Lotay VS; Liu Y; Brad Karpinka J; Karimi K; Zorn AM; Vize PD
Genesis; 2015 Aug; 53(8):486-97. PubMed ID: 26150211
[TBL] [Abstract][Full Text] [Related]
6. Xenopus genomic data and browser resources.
Vize PD; Zorn AM
Dev Biol; 2017 Jun; 426(2):194-199. PubMed ID: 27039265
[TBL] [Abstract][Full Text] [Related]
7. Xenbase: expansion and updates of the Xenopus model organism database.
James-Zorn C; Ponferrada VG; Jarabek CJ; Burns KA; Segerdell EJ; Lee J; Snyder K; Bhattacharyya B; Karpinka JB; Fortriede J; Bowes JB; Zorn AM; Vize PD
Nucleic Acids Res; 2013 Jan; 41(Database issue):D865-70. PubMed ID: 23125366
[TBL] [Abstract][Full Text] [Related]
8. Xenbase, the Xenopus model organism database; new virtualized system, data types and genomes.
Karpinka JB; Fortriede JD; Burns KA; James-Zorn C; Ponferrada VG; Lee J; Karimi K; Zorn AM; Vize PD
Nucleic Acids Res; 2015 Jan; 43(Database issue):D756-63. PubMed ID: 25313157
[TBL] [Abstract][Full Text] [Related]
9. The Virtual Xenbase: transitioning an online bioinformatics resource to a private cloud.
Karimi K; Vize PD
Database (Oxford); 2014; 2014():. PubMed ID: 25380782
[TBL] [Abstract][Full Text] [Related]
10. Enhanced XAO: the ontology of Xenopus anatomy and development underpins more accurate annotation of gene expression and queries on Xenbase.
Segerdell E; Ponferrada VG; James-Zorn C; Burns KA; Fortriede JD; Dahdul WM; Vize PD; Zorn AM
J Biomed Semantics; 2013 Oct; 4(1):31. PubMed ID: 24139024
[TBL] [Abstract][Full Text] [Related]
11. An ontology for Xenopus anatomy and development.
Segerdell E; Bowes JB; Pollet N; Vize PD
BMC Dev Biol; 2008 Sep; 8():92. PubMed ID: 18817563
[TBL] [Abstract][Full Text] [Related]
12. The Xenbase literature curation process.
Bowes JB; Snyder KA; James-Zorn C; Ponferrada VG; Jarabek CJ; Burns KA; Bhattacharyya B; Zorn AM; Vize PD
Database (Oxford); 2013; 2013():bas046. PubMed ID: 23303299
[TBL] [Abstract][Full Text] [Related]
13. The mouse Gene Expression Database (GXD): 2017 update.
Finger JH; Smith CM; Hayamizu TF; McCright IJ; Xu J; Law M; Shaw DR; Baldarelli RM; Beal JS; Blodgett O; Campbell JW; Corbani LE; Lewis JR; Forthofer KL; Frost PJ; Giannatto SC; Hutchins LN; Miers DB; Motenko H; Stone KR; Eppig JT; Kadin JA; Richardson JE; Ringwald M
Nucleic Acids Res; 2017 Jan; 45(D1):D730-D736. PubMed ID: 27899677
[TBL] [Abstract][Full Text] [Related]
14. Echinobase: leveraging an extant model organism database to build a knowledgebase supporting research on the genomics and biology of echinoderms.
Arshinoff BI; Cary GA; Karimi K; Foley S; Agalakov S; Delgado F; Lotay VS; Ku CJ; Pells TJ; Beatman TR; Kim E; Cameron RA; Vize PD; Telmer CA; Croce JC; Ettensohn CA; Hinman VF
Nucleic Acids Res; 2022 Jan; 50(D1):D970-D979. PubMed ID: 34791383
[TBL] [Abstract][Full Text] [Related]
15. The Xenopus ORFeome: A resource that enables functional genomics.
Grant IM; Balcha D; Hao T; Shen Y; Trivedi P; Patrushev I; Fortriede JD; Karpinka JB; Liu L; Zorn AM; Stukenberg PT; Hill DE; Gilchrist MJ
Dev Biol; 2015 Dec; 408(2):345-57. PubMed ID: 26391338
[TBL] [Abstract][Full Text] [Related]
16. Mouse Genome Database (MGD)-2017: community knowledge resource for the laboratory mouse.
Blake JA; Eppig JT; Kadin JA; Richardson JE; Smith CL; Bult CJ;
Nucleic Acids Res; 2017 Jan; 45(D1):D723-D729. PubMed ID: 27899570
[TBL] [Abstract][Full Text] [Related]
17. Database and Informatic Challenges in Representing Both Diploid and Tetraploid Xenopus Species in Xenbase.
Vize PD; Liu Y; Karimi K
Cytogenet Genome Res; 2015; 145(3-4):278-82. PubMed ID: 26022975
[TBL] [Abstract][Full Text] [Related]
18. Using ZFIN: Data Types, Organization, and Retrieval.
Van Slyke CE; Bradford YM; Howe DG; Fashena DS; Ramachandran S; Ruzicka L;
Methods Mol Biol; 2018; 1757():307-347. PubMed ID: 29761463
[TBL] [Abstract][Full Text] [Related]
19. XenMine: A genomic interaction tool for the Xenopus community.
Reid CD; Karra K; Chang J; Piskol R; Li Q; Li JB; Cherry JM; Baker JC
Dev Biol; 2017 Jun; 426(2):155-164. PubMed ID: 27157655
[TBL] [Abstract][Full Text] [Related]
20. Using the Candida Genome Database.
Skrzypek MS; Binkley J; Sherlock G
Methods Mol Biol; 2018; 1757():31-47. PubMed ID: 29761455
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
