BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

151 related articles for article (PubMed ID: 29762754)

  • 1. Optimized distributed systems achieve significant performance improvement on sorted merging of massive VCF files.
    Sun X; Gao J; Jin P; Eng C; Burchard EG; Beaty TH; Ruczinski I; Mathias RA; Barnes K; Wang F; Qin ZS;
    Gigascience; 2018 Jun; 7(6):. PubMed ID: 29762754
    [TBL] [Abstract][Full Text] [Related]  

  • 2. The variant call format and VCFtools.
    Danecek P; Auton A; Abecasis G; Albers CA; Banks E; DePristo MA; Handsaker RE; Lunter G; Marth GT; Sherry ST; McVean G; Durbin R;
    Bioinformatics; 2011 Aug; 27(15):2156-8. PubMed ID: 21653522
    [TBL] [Abstract][Full Text] [Related]  

  • 3. ILIAD: a suite of automated Snakemake workflows for processing genomic data for downstream applications.
    Herrick N; Walsh S
    BMC Bioinformatics; 2023 Nov; 24(1):424. PubMed ID: 37940870
    [TBL] [Abstract][Full Text] [Related]  

  • 4. VC@Scale: Scalable and high-performance variant calling on cluster environments.
    Ahmad T; Al Ars Z; Hofstee HP
    Gigascience; 2021 Sep; 10(9):. PubMed ID: 34494101
    [TBL] [Abstract][Full Text] [Related]  

  • 5. SeqHBase: a big data toolset for family based sequencing data analysis.
    He M; Person TN; Hebbring SJ; Heinzen E; Ye Z; Schrodi SJ; McPherson EW; Lin SM; Peissig PL; Brilliant MH; O'Rawe J; Robison RJ; Lyon GJ; Wang K
    J Med Genet; 2015 Apr; 52(4):282-8. PubMed ID: 25587064
    [TBL] [Abstract][Full Text] [Related]  

  • 6. VCF-Explorer: filtering and analysing whole genome VCF files.
    Akgün M; Demirci H
    Bioinformatics; 2017 Nov; 33(21):3468-3470. PubMed ID: 29036499
    [TBL] [Abstract][Full Text] [Related]  

  • 7. SeqArray-a storage-efficient high-performance data format for WGS variant calls.
    Zheng X; Gogarten SM; Lawrence M; Stilp A; Conomos MP; Weir BS; Laurie C; Levine D
    Bioinformatics; 2017 Aug; 33(15):2251-2257. PubMed ID: 28334390
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Rainbow: a tool for large-scale whole-genome sequencing data analysis using cloud computing.
    Zhao S; Prenger K; Smith L; Messina T; Fan H; Jaeger E; Stephens S
    BMC Genomics; 2013 Jun; 14():425. PubMed ID: 23802613
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Optimizing performance of GATK workflows using Apache Arrow In-Memory data framework.
    Ahmad T; Ahmed N; Al-Ars Z; Hofstee HP
    BMC Genomics; 2020 Nov; 21(Suppl 10):683. PubMed ID: 33208101
    [TBL] [Abstract][Full Text] [Related]  

  • 10. VCF-kit: assorted utilities for the variant call format.
    Cook DE; Andersen EC
    Bioinformatics; 2017 May; 33(10):1581-1582. PubMed ID: 28093408
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Analysis-ready VCF at Biobank scale using Zarr.
    Czech E; Millar TR; White T; Jeffery B; Miles A; Tallman S; Wojdyla R; Zabad S; Hammerbacher J; Kelleher J
    bioRxiv; 2024 Jun; ():. PubMed ID: 38915693
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Big Data in metagenomics: Apache Spark vs MPI.
    Abuín JM; Lopes N; Ferreira L; Pena TF; Schmidt B
    PLoS One; 2020; 15(10):e0239741. PubMed ID: 33022000
    [TBL] [Abstract][Full Text] [Related]  

  • 13. re-Searcher: GUI-based bioinformatics tool for simplified genomics data mining of VCF files.
    Karabayev D; Molkenov A; Yerulanuly K; Kabimoldayev I; Daniyarov A; Sharip A; Seisenova A; Zhumadilov Z; Kairov U
    PeerJ; 2021; 9():e11333. PubMed ID: 33987016
    [TBL] [Abstract][Full Text] [Related]  

  • 14. MISS-D: A fast and scalable framework of medical image storage service based on distributed file system.
    Li W; Feng C; Yu K; Zhao D
    Comput Methods Programs Biomed; 2020 Apr; 186():105189. PubMed ID: 31759298
    [TBL] [Abstract][Full Text] [Related]  

  • 15. CloudDOE: a user-friendly tool for deploying Hadoop clouds and analyzing high-throughput sequencing data with MapReduce.
    Chung WC; Chen CC; Ho JM; Lin CY; Hsu WL; Wang YC; Lee DT; Lai F; Huang CW; Chang YJ
    PLoS One; 2014; 9(6):e98146. PubMed ID: 24897343
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Analysis of Genetic Ancestry from NGS Data Using EthSEQ.
    Dalfovo D; Romanel A
    Curr Protoc; 2023 Feb; 3(2):e663. PubMed ID: 36779822
    [TBL] [Abstract][Full Text] [Related]  

  • 17. VIVA (VIsualization of VAriants): A VCF File Visualization Tool.
    Tollefson GA; Schuster J; Gelin F; Agudelo A; Ragavendran A; Restrepo I; Stey P; Padbury J; Uzun A
    Sci Rep; 2019 Sep; 9(1):12648. PubMed ID: 31477778
    [TBL] [Abstract][Full Text] [Related]  

  • 18. FASTA/Q data compressors for MapReduce-Hadoop genomics: space and time savings made easy.
    Ferraro Petrillo U; Palini F; Cattaneo G; Giancarlo R
    BMC Bioinformatics; 2021 Mar; 22(1):144. PubMed ID: 33752596
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Variant-Kudu: An Efficient Tool kit Leveraging Distributed Bitmap Index for Analysis of Massive Genetic Variation Datasets.
    Fan J; Dong S; Wang B
    J Comput Biol; 2020 Sep; 27(9):1350-1360. PubMed ID: 31904999
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Large-scale virtual screening on public cloud resources with Apache Spark.
    Capuccini M; Ahmed L; Schaal W; Laure E; Spjuth O
    J Cheminform; 2017; 9():15. PubMed ID: 28316653
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 8.