416 related articles for article (PubMed ID: 29764363)
1. GATC: a genetic algorithm for gene tree construction under the Duplication-Transfer-Loss model of evolution.
Noutahi E; El-Mabrouk N
BMC Genomics; 2018 May; 19(Suppl 2):102. PubMed ID: 29764363
[TBL] [Abstract][Full Text] [Related]
2. Exact Algorithms for Duplication-Transfer-Loss Reconciliation with Non-Binary Gene Trees.
Kordi M; Bansal MS
IEEE/ACM Trans Comput Biol Bioinform; 2019; 16(4):1077-1090. PubMed ID: 28622673
[TBL] [Abstract][Full Text] [Related]
3. On the impact of uncertain gene tree rooting on duplication-transfer-loss reconciliation.
Kundu S; Bansal MS
BMC Bioinformatics; 2018 Aug; 19(Suppl 9):290. PubMed ID: 30367593
[TBL] [Abstract][Full Text] [Related]
4. On the Complexity of Duplication-Transfer-Loss Reconciliation with Non-Binary Gene Trees.
Kordi M; Bansal MS
IEEE/ACM Trans Comput Biol Bioinform; 2017; 14(3):587-599. PubMed ID: 28055898
[TBL] [Abstract][Full Text] [Related]
5. Joint amalgamation of most parsimonious reconciled gene trees.
Scornavacca C; Jacox E; Szöllősi GJ
Bioinformatics; 2015 Mar; 31(6):841-8. PubMed ID: 25380957
[TBL] [Abstract][Full Text] [Related]
6. Gene Tree Construction and Correction Using SuperTree and Reconciliation.
Lafond M; Chauve C; El-Mabrouk N; Ouangraoua A
IEEE/ACM Trans Comput Biol Bioinform; 2018; 15(5):1560-1570. PubMed ID: 28678712
[TBL] [Abstract][Full Text] [Related]
7. Efficient algorithms for the reconciliation problem with gene duplication, horizontal transfer and loss.
Bansal MS; Alm EJ; Kellis M
Bioinformatics; 2012 Jun; 28(12):i283-91. PubMed ID: 22689773
[TBL] [Abstract][Full Text] [Related]
8. GeneRax: A Tool for Species-Tree-Aware Maximum Likelihood-Based Gene Family Tree Inference under Gene Duplication, Transfer, and Loss.
Morel B; Kozlov AM; Stamatakis A; Szöllősi GJ
Mol Biol Evol; 2020 Sep; 37(9):2763-2774. PubMed ID: 32502238
[TBL] [Abstract][Full Text] [Related]
9. ecceTERA: comprehensive gene tree-species tree reconciliation using parsimony.
Jacox E; Chauve C; Szöllősi GJ; Ponty Y; Scornavacca C
Bioinformatics; 2016 Jul; 32(13):2056-8. PubMed ID: 27153713
[TBL] [Abstract][Full Text] [Related]
10. Algorithms: simultaneous error-correction and rooting for gene tree reconciliation and the gene duplication problem.
Górecki P; Eulenstein O
BMC Bioinformatics; 2012 Jun; 13 Suppl 10(Suppl 10):S14. PubMed ID: 22759419
[TBL] [Abstract][Full Text] [Related]
11. Inferring duplication episodes from unrooted gene trees.
Paszek J; Górecki P
BMC Genomics; 2018 May; 19(Suppl 5):288. PubMed ID: 29745844
[TBL] [Abstract][Full Text] [Related]
12. Efficient exploration of the space of reconciled gene trees.
Szöllõsi GJ; Rosikiewicz W; Boussau B; Tannier E; Daubin V
Syst Biol; 2013 Nov; 62(6):901-12. PubMed ID: 23925510
[TBL] [Abstract][Full Text] [Related]
13. A hybrid micro-macroevolutionary approach to gene tree reconstruction.
Durand D; Halldórsson BV; Vernot B
J Comput Biol; 2006 Mar; 13(2):320-35. PubMed ID: 16597243
[TBL] [Abstract][Full Text] [Related]
14. Reconciliation with non-binary species trees.
Vernot B; Stolzer M; Goldman A; Durand D
J Comput Biol; 2008 Oct; 15(8):981-1006. PubMed ID: 18808330
[TBL] [Abstract][Full Text] [Related]
15. Improved gene tree error correction in the presence of horizontal gene transfer.
Bansal MS; Wu YC; Alm EJ; Kellis M
Bioinformatics; 2015 Apr; 31(8):1211-8. PubMed ID: 25481006
[TBL] [Abstract][Full Text] [Related]
16. Reconciliation with non-binary species trees.
Vernot B; Stolzer M; Goldman A; Durand D
Comput Syst Bioinformatics Conf; 2007; 6():441-52. PubMed ID: 17951846
[TBL] [Abstract][Full Text] [Related]
17. Maximum parsimony reconciliation in the DTLOR model.
Liu J; Mawhorter R; Liu N; Santichaivekin S; Bush E; Libeskind-Hadas R
BMC Bioinformatics; 2021 Aug; 22(Suppl 10):394. PubMed ID: 34348661
[TBL] [Abstract][Full Text] [Related]
18. Most parsimonious reconciliation in the presence of gene duplication, loss, and deep coalescence using labeled coalescent trees.
Wu YC; Rasmussen MD; Bansal MS; Kellis M
Genome Res; 2014 Mar; 24(3):475-86. PubMed ID: 24310000
[TBL] [Abstract][Full Text] [Related]
19. Reconstructing protein and gene phylogenies using reconciliation and soft-clustering.
Kuitche E; Lafond M; Ouangraoua A
J Bioinform Comput Biol; 2017 Dec; 15(6):1740007. PubMed ID: 29169277
[TBL] [Abstract][Full Text] [Related]
20. Resolution and reconciliation of non-binary gene trees with transfers, duplications and losses.
Jacox E; Weller M; Tannier E; Scornavacca C
Bioinformatics; 2017 Apr; 33(7):980-987. PubMed ID: 28073758
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
