171 related articles for article (PubMed ID: 29769282)
21. Quantifying the accuracy of ancestral state prediction in a phylogenetic tree under maximum parsimony.
Herbst L; Li H; Steel M
J Math Biol; 2019 May; 78(6):1953-1979. PubMed ID: 30758663
[TBL] [Abstract][Full Text] [Related]
22. Analysis of site frequency spectra from Arabidopsis with context-dependent corrections for ancestral misinference.
Morton BR; Dar VU; Wright SI
Plant Physiol; 2009 Feb; 149(2):616-24. PubMed ID: 19019983
[TBL] [Abstract][Full Text] [Related]
23. ProtASR: An Evolutionary Framework for Ancestral Protein Reconstruction with Selection on Folding Stability.
Arenas M; Weber CC; Liberles DA; Bastolla U
Syst Biol; 2017 Nov; 66(6):1054-1064. PubMed ID: 28057858
[TBL] [Abstract][Full Text] [Related]
24. A simple method for estimating the parameter of substitution rate variation among sites.
Gu X; Zhang J
Mol Biol Evol; 1997 Nov; 14(11):1106-13. PubMed ID: 9364768
[TBL] [Abstract][Full Text] [Related]
25. Molecular systematics of the Eastern Fence Lizard (Sceloporus undulatus): a comparison of Parsimony, Likelihood, and Bayesian approaches.
Leaché AD; Reeder TW
Syst Biol; 2002 Feb; 51(1):44-68. PubMed ID: 11943092
[TBL] [Abstract][Full Text] [Related]
26. A new method for locating changes in a tree reveals distinct nucleotide polymorphism vs. divergence patterns in mouse mitochondrial control region.
Galtier N; Boursot P
J Mol Evol; 2000 Mar; 50(3):224-31. PubMed ID: 10754064
[TBL] [Abstract][Full Text] [Related]
27. Reliabilities of parsimony-based and likelihood-based methods for detecting positive selection at single amino acid sites.
Suzuki Y; Nei M
Mol Biol Evol; 2001 Dec; 18(12):2179-85. PubMed ID: 11719567
[TBL] [Abstract][Full Text] [Related]
28. Inferring ancestral sequences in taxon-rich phylogenies.
Gascuel O; Steel M
Math Biosci; 2010 Oct; 227(2):125-35. PubMed ID: 20627110
[TBL] [Abstract][Full Text] [Related]
29. The effects of nucleotide substitution model assumptions on estimates of nonparametric bootstrap support.
Buckley TR; Cunningham CW
Mol Biol Evol; 2002 Apr; 19(4):394-405. PubMed ID: 11919280
[TBL] [Abstract][Full Text] [Related]
30. Random roots and lineage sorting.
Rosenfeld JA; Payne A; DeSalle R
Mol Phylogenet Evol; 2012 Jul; 64(1):12-20. PubMed ID: 22445448
[TBL] [Abstract][Full Text] [Related]
31. The effect of topology on estimates of among-site rate variation.
Sullivan J; Holsinger KE; Simon C
J Mol Evol; 1996 Feb; 42(2):308-12. PubMed ID: 8919882
[TBL] [Abstract][Full Text] [Related]
32. Maximum likelihood estimates of species trees: how accuracy of phylogenetic inference depends upon the divergence history and sampling design.
McCormack JE; Huang H; Knowles LL
Syst Biol; 2009 Oct; 58(5):501-8. PubMed ID: 20525604
[TBL] [Abstract][Full Text] [Related]
33. Estimating phylogenetic trees from pairwise likelihoods and posterior probabilities of substitution counts.
Holder MT; Steel M
J Theor Biol; 2011 Jul; 280(1):159-66. PubMed ID: 21540039
[TBL] [Abstract][Full Text] [Related]
34. Penalized likelihood phylogenetic inference: bridging the parsimony-likelihood gap.
Kim J; Sanderson MJ
Syst Biol; 2008 Oct; 57(5):665-74. PubMed ID: 18853355
[TBL] [Abstract][Full Text] [Related]
35. Efficiencies of fast algorithms of phylogenetic inference under the criteria of maximum parsimony, minimum evolution, and maximum likelihood when a large number of sequences are used.
Takahashi K; Nei M
Mol Biol Evol; 2000 Aug; 17(8):1251-8. PubMed ID: 10908645
[TBL] [Abstract][Full Text] [Related]
36. Phylogeny of Bembidion and related ground beetles (Coleoptera: Carabidae: Trechinae: Bembidiini: Bembidiina).
Maddison DR
Mol Phylogenet Evol; 2012 Jun; 63(3):533-76. PubMed ID: 22421212
[TBL] [Abstract][Full Text] [Related]
37. Evolutionary distances between nucleotide sequences based on the distribution of substitution rates among sites as estimated by parsimony.
Tourasse NJ; Gouy M
Mol Biol Evol; 1997 Mar; 14(3):287-98. PubMed ID: 9066796
[TBL] [Abstract][Full Text] [Related]
38. Models of gene gain and gene loss for probabilistic reconstruction of gene content in the last universal common ancestor of life.
Kannan L; Li H; Rubinstein B; Mushegian A
Biol Direct; 2013 Dec; 8():32. PubMed ID: 24354654
[TBL] [Abstract][Full Text] [Related]
39. Empirical and hierarchical Bayesian estimation of ancestral states.
Huelsenbeck JP; Bollback JP
Syst Biol; 2001 Jun; 50(3):351-66. PubMed ID: 12116580
[TBL] [Abstract][Full Text] [Related]
40. [Molecular phylogeny of Drosophila auraria species complex].
Lu J; Lü J; Chen HX; Zhang WX; Dai ZH
Yi Chuan Xue Bao; 2002 Jan; 29(1):39-49. PubMed ID: 11838374
[TBL] [Abstract][Full Text] [Related]
[Previous] [Next] [New Search]