These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

195 related articles for article (PubMed ID: 29771363)

  • 1. Multiple Sequence Alignment Averaging Improves Phylogeny Reconstruction.
    Ashkenazy H; Sela I; Levy Karin E; Landan G; Pupko T
    Syst Biol; 2019 Jan; 68(1):117-130. PubMed ID: 29771363
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Current Methods for Automated Filtering of Multiple Sequence Alignments Frequently Worsen Single-Gene Phylogenetic Inference.
    Tan G; Muffato M; Ledergerber C; Herrero J; Goldman N; Gil M; Dessimoz C
    Syst Biol; 2015 Sep; 64(5):778-91. PubMed ID: 26031838
    [TBL] [Abstract][Full Text] [Related]  

  • 3. TCS: a new multiple sequence alignment reliability measure to estimate alignment accuracy and improve phylogenetic tree reconstruction.
    Chang JM; Di Tommaso P; Notredame C
    Mol Biol Evol; 2014 Jun; 31(6):1625-37. PubMed ID: 24694831
    [TBL] [Abstract][Full Text] [Related]  

  • 4. GUIDANCE2: accurate detection of unreliable alignment regions accounting for the uncertainty of multiple parameters.
    Sela I; Ashkenazy H; Katoh K; Pupko T
    Nucleic Acids Res; 2015 Jul; 43(W1):W7-14. PubMed ID: 25883146
    [TBL] [Abstract][Full Text] [Related]  

  • 5. An alignment confidence score capturing robustness to guide tree uncertainty.
    Penn O; Privman E; Landan G; Graur D; Pupko T
    Mol Biol Evol; 2010 Aug; 27(8):1759-67. PubMed ID: 20207713
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Evidence of Statistical Inconsistency of Phylogenetic Methods in the Presence of Multiple Sequence Alignment Uncertainty.
    Md Mukarram Hossain AS; Blackburne BP; Shah A; Whelan S
    Genome Biol Evol; 2015 Jul; 7(8):2102-16. PubMed ID: 26139831
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Characterization of pairwise and multiple sequence alignment errors.
    Landan G; Graur D
    Gene; 2009 Jul; 441(1-2):141-7. PubMed ID: 18614299
    [TBL] [Abstract][Full Text] [Related]  

  • 8. The effect of the guide tree on multiple sequence alignments and subsequent phylogenetic analyses.
    Nelesen S; Liu K; Zhao D; Linder CR; Warnow T
    Pac Symp Biocomput; 2008; ():25-36. PubMed ID: 18229674
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Characterization of multiple sequence alignment errors using complete-likelihood score and position-shift map.
    Ezawa K
    BMC Bioinformatics; 2016 Mar; 17():133. PubMed ID: 26992851
    [TBL] [Abstract][Full Text] [Related]  

  • 10. PhyPA: Phylogenetic method with pairwise sequence alignment outperforms likelihood methods in phylogenetics involving highly diverged sequences.
    Xia X
    Mol Phylogenet Evol; 2016 Sep; 102():331-43. PubMed ID: 27377322
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Evaluating the usefulness of alignment filtering methods to reduce the impact of errors on evolutionary inferences.
    Di Franco A; Poujol R; Baurain D; Philippe H
    BMC Evol Biol; 2019 Jan; 19(1):21. PubMed ID: 30634908
    [TBL] [Abstract][Full Text] [Related]  

  • 12. PASTA with many application-aware optimization criteria for alignment based phylogeny inference.
    Nayeem MA; Bayzid MS; Samudro NA; Rahman MS; Rahman MS
    Comput Biol Chem; 2022 Jun; 98():107661. PubMed ID: 35339762
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Measuring the distance between multiple sequence alignments.
    Blackburne BP; Whelan S
    Bioinformatics; 2012 Feb; 28(4):495-502. PubMed ID: 22199391
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Performance comparison between k-tuple distance and four model-based distances in phylogenetic tree reconstruction.
    Yang K; Zhang L
    Nucleic Acids Res; 2008 Mar; 36(5):e33. PubMed ID: 18296485
    [TBL] [Abstract][Full Text] [Related]  

  • 15. PnpProbs: a better multiple sequence alignment tool by better handling of guide trees.
    Ye Y; Lam TW; Ting HF
    BMC Bioinformatics; 2016 Aug; 17 Suppl 8(Suppl 8):285. PubMed ID: 27585754
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Maximum Likelihood Phylogenetic Inference is Consistent on Multiple Sequence Alignments, with or without Gaps.
    Truszkowski J; Goldman N
    Syst Biol; 2016 Mar; 65(2):328-33. PubMed ID: 26615177
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Efficient representation of uncertainty in multiple sequence alignments using directed acyclic graphs.
    Herman JL; Novák Á; Lyngsø R; Szabó A; Miklós I; Hein J
    BMC Bioinformatics; 2015 Apr; 16():108. PubMed ID: 25888064
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Multiobjective Formulation of Multiple Sequence Alignment for Phylogeny Inference.
    Nayeem MA; Bayzid MS; Rahman AH; Shahriyar R; Rahman MS
    IEEE Trans Cybern; 2022 May; 52(5):2775-2786. PubMed ID: 33044939
    [TBL] [Abstract][Full Text] [Related]  

  • 19. TCS: a web server for multiple sequence alignment evaluation and phylogenetic reconstruction.
    Chang JM; Di Tommaso P; Lefort V; Gascuel O; Notredame C
    Nucleic Acids Res; 2015 Jul; 43(W1):W3-6. PubMed ID: 25855806
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Generalized Bootstrap Supports for Phylogenetic Analyses of Protein Sequences Incorporating Alignment Uncertainty.
    Chatzou M; Floden EW; Di Tommaso P; Gascuel O; Notredame C
    Syst Biol; 2018 Nov; 67(6):997-1009. PubMed ID: 30295908
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 10.