These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

193 related articles for article (PubMed ID: 29790941)

  • 41. COMAN: a web server for comprehensive metatranscriptomics analysis.
    Ni Y; Li J; Panagiotou G
    BMC Genomics; 2016 Aug; 17(1):622. PubMed ID: 27515514
    [TBL] [Abstract][Full Text] [Related]  

  • 42. Chordomics: a visualization tool for linking function to phylogeny in microbiomes.
    McDonnell K; Waters N; Howley E; Abram F
    Bioinformatics; 2020 Feb; 36(4):1309-1310. PubMed ID: 31539022
    [TBL] [Abstract][Full Text] [Related]  

  • 43. ZBIT Bioinformatics Toolbox: A Web-Platform for Systems Biology and Expression Data Analysis.
    Römer M; Eichner J; Dräger A; Wrzodek C; Wrzodek F; Zell A
    PLoS One; 2016; 11(2):e0149263. PubMed ID: 26882475
    [TBL] [Abstract][Full Text] [Related]  

  • 44. ssbio: a Python framework for structural systems biology.
    Mih N; Brunk E; Chen K; Catoiu E; Sastry A; Kavvas E; Monk JM; Zhang Z; Palsson BO
    Bioinformatics; 2018 Jun; 34(12):2155-2157. PubMed ID: 29444205
    [TBL] [Abstract][Full Text] [Related]  

  • 45. Oqtans: the RNA-seq workbench in the cloud for complete and reproducible quantitative transcriptome analysis.
    Sreedharan VT; Schultheiss SJ; Jean G; Kahles A; Bohnert R; Drewe P; Mudrakarta P; Görnitz N; Zeller G; Rätsch G
    Bioinformatics; 2014 May; 30(9):1300-1. PubMed ID: 24413671
    [TBL] [Abstract][Full Text] [Related]  

  • 46. BioMaS: a modular pipeline for Bioinformatic analysis of Metagenomic AmpliconS.
    Fosso B; Santamaria M; Marzano M; Alonso-Alemany D; Valiente G; Donvito G; Monaco A; Notarangelo P; Pesole G
    BMC Bioinformatics; 2015 Jul; 16():203. PubMed ID: 26130132
    [TBL] [Abstract][Full Text] [Related]  

  • 47. Nanopype: a modular and scalable nanopore data processing pipeline.
    Giesselmann P; Hetzel S; Müller FJ; Meissner A; Kretzmer H
    Bioinformatics; 2019 Nov; 35(22):4770-4772. PubMed ID: 31192347
    [TBL] [Abstract][Full Text] [Related]  

  • 48. GalaxyCloudRunner: enhancing scalable computing for Galaxy.
    Goonasekera N; Mahmoud A; Chilton J; Afgan E
    Bioinformatics; 2021 Jul; 37(12):1763-1765. PubMed ID: 33104194
    [TBL] [Abstract][Full Text] [Related]  

  • 49. GalaxyTrakr: a distributed analysis tool for public health whole genome sequence data accessible to non-bioinformaticians.
    Gangiredla J; Rand H; Benisatto D; Payne J; Strittmatter C; Sanders J; Wolfgang WJ; Libuit K; Herrick JB; Prarat M; Toro M; Farrell T; Strain E
    BMC Genomics; 2021 Feb; 22(1):114. PubMed ID: 33568057
    [TBL] [Abstract][Full Text] [Related]  

  • 50. screenwerk: a modular tool for the design and analysis of drug combination screens.
    Hanes R; Ayuda-Durán P; Rønneberg L; Nakken S; Hovig E; Zucknick M; Enserink JM
    Bioinformatics; 2023 Jan; 39(1):. PubMed ID: 36573326
    [TBL] [Abstract][Full Text] [Related]  

  • 51. The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2022 update.
    Galaxy Community
    Nucleic Acids Res; 2022 Jul; 50(W1):W345-W351. PubMed ID: 35446428
    [TBL] [Abstract][Full Text] [Related]  

  • 52. Interactive Web-Based Services for Metagenomic Data Analysis and Comparisons.
    Abdelsalam NA; Elshora H; El-Hadidi M
    Methods Mol Biol; 2023; 2649():133-174. PubMed ID: 37258861
    [TBL] [Abstract][Full Text] [Related]  

  • 53. MetaTopics: an integration tool to analyze microbial community profile by topic model.
    Yan J; Chuai G; Qi T; Shao F; Zhou C; Zhu C; Yang J; Yu Y; Shi C; Kang N; He Y; Liu Q
    BMC Genomics; 2017 Jan; 18(Suppl 1):962. PubMed ID: 28198670
    [TBL] [Abstract][Full Text] [Related]  

  • 54. NeuroPycon: An open-source python toolbox for fast multi-modal and reproducible brain connectivity pipelines.
    Meunier D; Pascarella A; Altukhov D; Jas M; Combrisson E; Lajnef T; Bertrand-Dubois D; Hadid V; Alamian G; Alves J; Barlaam F; Saive AL; Dehgan A; Jerbi K
    Neuroimage; 2020 Oct; 219():117020. PubMed ID: 32522662
    [TBL] [Abstract][Full Text] [Related]  

  • 55. IBDsite: a Galaxy-interacting, integrative database for supporting inflammatory bowel disease high throughput data analysis.
    Merelli I; Viti F; Milanesi L
    BMC Bioinformatics; 2012; 13 Suppl 14(Suppl 14):S5. PubMed ID: 23095257
    [TBL] [Abstract][Full Text] [Related]  

  • 56. GenPipes: an open-source framework for distributed and scalable genomic analyses.
    Bourgey M; Dali R; Eveleigh R; Chen KC; Letourneau L; Fillon J; Michaud M; Caron M; Sandoval J; Lefebvre F; Leveque G; Mercier E; Bujold D; Marquis P; Van PT; Anderson de Lima Morais D; Tremblay J; Shao X; Henrion E; Gonzalez E; Quirion PO; Caron B; Bourque G
    Gigascience; 2019 Jun; 8(6):. PubMed ID: 31185495
    [TBL] [Abstract][Full Text] [Related]  

  • 57. Metaproteomic analysis using the Galaxy framework.
    Jagtap PD; Blakely A; Murray K; Stewart S; Kooren J; Johnson JE; Rhodus NL; Rudney J; Griffin TJ
    Proteomics; 2015 Oct; 15(20):3553-65. PubMed ID: 26058579
    [TBL] [Abstract][Full Text] [Related]  

  • 58. Natrix: a Snakemake-based workflow for processing, clustering, and taxonomically assigning amplicon sequencing reads.
    Welzel M; Lange A; Heider D; Schwarz M; Freisleben B; Jensen M; Boenigk J; Beisser D
    BMC Bioinformatics; 2020 Nov; 21(1):526. PubMed ID: 33198651
    [TBL] [Abstract][Full Text] [Related]  

  • 59. Enhanced reproducibility of SADI web service workflows with Galaxy and Docker.
    Aranguren ME; Wilkinson MD
    Gigascience; 2015; 4():59. PubMed ID: 26640691
    [TBL] [Abstract][Full Text] [Related]  

  • 60. Bioinformatics recipes: creating, executing and distributing reproducible data analysis workflows.
    Aberra N; Sebastian A; Maloy AP; Rees CB; Bartron ML; Albert I
    BMC Bioinformatics; 2020 Jul; 21(1):292. PubMed ID: 32640986
    [TBL] [Abstract][Full Text] [Related]  

    [Previous]   [Next]    [New Search]
    of 10.