147 related articles for article (PubMed ID: 29790960)
1. ComplexContact: a web server for inter-protein contact prediction using deep learning.
Zeng H; Wang S; Zhou T; Zhao F; Li X; Wu Q; Xu J
Nucleic Acids Res; 2018 Jul; 46(W1):W432-W437. PubMed ID: 29790960
[TBL] [Abstract][Full Text] [Related]
2. Accurate prediction of inter-protein residue-residue contacts for homo-oligomeric protein complexes.
Yan Y; Huang SY
Brief Bioinform; 2021 Sep; 22(5):. PubMed ID: 33693482
[TBL] [Abstract][Full Text] [Related]
3. Integrating unsupervised language model with multi-view multiple sequence alignments for high-accuracy inter-chain contact prediction.
Liu Z; Zhu YH; Shen LC; Xiao X; Qiu WR; Yu DJ
Comput Biol Med; 2023 Nov; 166():107529. PubMed ID: 37748220
[TBL] [Abstract][Full Text] [Related]
4. New encouraging developments in contact prediction: Assessment of the CASP11 results.
Monastyrskyy B; D'Andrea D; Fidelis K; Tramontano A; Kryshtafovych A
Proteins; 2016 Sep; 84 Suppl 1(Suppl 1):131-44. PubMed ID: 26474083
[TBL] [Abstract][Full Text] [Related]
5. Analyzing effect of quadruple multiple sequence alignments on deep learning based protein inter-residue distance prediction.
Jain A; Terashi G; Kagaya Y; Maddhuri Venkata Subramaniya SR; Christoffer C; Kihara D
Sci Rep; 2021 Apr; 11(1):7574. PubMed ID: 33828153
[TBL] [Abstract][Full Text] [Related]
6. DeepComplex: A Web Server of Predicting Protein Complex Structures by Deep Learning Inter-chain Contact Prediction and Distance-Based Modelling.
Quadir F; Roy RS; Soltanikazemi E; Cheng J
Front Mol Biosci; 2021; 8():716973. PubMed ID: 34497831
[TBL] [Abstract][Full Text] [Related]
7. Template-based prediction of protein structure with deep learning.
Zhang H; Shen Y
BMC Genomics; 2020 Dec; 21(Suppl 11):878. PubMed ID: 33372607
[TBL] [Abstract][Full Text] [Related]
8. Pairing interacting protein sequences using masked language modeling.
Lupo U; Sgarbossa D; Bitbol AF
Proc Natl Acad Sci U S A; 2024 Jul; 121(27):e2311887121. PubMed ID: 38913900
[TBL] [Abstract][Full Text] [Related]
9. Petabase-Scale Homology Search for Structure Prediction.
Lee S; Kim G; Karin EL; Mirdita M; Park S; Chikhi R; Babaian A; Kryshtafovych A; Steinegger M
Cold Spring Harb Perspect Biol; 2024 May; 16(5):. PubMed ID: 38316555
[TBL] [Abstract][Full Text] [Related]
10. CopulaNet: Learning residue co-evolution directly from multiple sequence alignment for protein structure prediction.
Ju F; Zhu J; Shao B; Kong L; Liu TY; Zheng WM; Bu D
Nat Commun; 2021 May; 12(1):2535. PubMed ID: 33953201
[TBL] [Abstract][Full Text] [Related]
11. CMsearch: simultaneous exploration of protein sequence space and structure space improves not only protein homology detection but also protein structure prediction.
Cui X; Lu Z; Wang S; Jing-Yan Wang J; Gao X
Bioinformatics; 2016 Jun; 32(12):i332-i340. PubMed ID: 27307635
[TBL] [Abstract][Full Text] [Related]
12. EPSILON-CP: using deep learning to combine information from multiple sources for protein contact prediction.
Stahl K; Schneider M; Brock O
BMC Bioinformatics; 2017 Jun; 18(1):303. PubMed ID: 28623886
[TBL] [Abstract][Full Text] [Related]
13. CSA: comprehensive comparison of pairwise protein structure alignments.
Wohlers I; Malod-Dognin N; Andonov R; Klau GW
Nucleic Acids Res; 2012 Jul; 40(Web Server issue):W303-9. PubMed ID: 22553365
[TBL] [Abstract][Full Text] [Related]
14. ifDEEPre: large protein language-based deep learning enables interpretable and fast predictions of enzyme commission numbers.
Tan Q; Xiao J; Chen J; Wang Y; Zhang Z; Zhao T; Li Y
Brief Bioinform; 2024 May; 25(4):. PubMed ID: 38942594
[TBL] [Abstract][Full Text] [Related]
15. FuncPhos-STR: An integrated deep neural network for functional phosphosite prediction based on AlphaFold protein structure and dynamics.
Zhang G; Zhang C; Cai M; Luo C; Zhu F; Liang Z
Int J Biol Macromol; 2024 May; 266(Pt 1):131180. PubMed ID: 38552697
[TBL] [Abstract][Full Text] [Related]
16. Single-sequence protein structure prediction by integrating protein language models.
Jing X; Wu F; Luo X; Xu J
Proc Natl Acad Sci U S A; 2024 Mar; 121(13):e2308788121. PubMed ID: 38507445
[TBL] [Abstract][Full Text] [Related]
17. Protein language model-embedded geometric graphs power inter-protein contact prediction.
Si Y; Yan C
Elife; 2024 Apr; 12():. PubMed ID: 38564241
[TBL] [Abstract][Full Text] [Related]
18. One step forward towards deep-learning protein complex structure prediction by precise multiple sequence alignment construction.
Zheng W; Wuyun Q; Zhang Y
Clin Transl Med; 2024 Jun; 14(6):e1689. PubMed ID: 38880984
[No Abstract] [Full Text] [Related]
19. Recent Advances in Protein Homology Detection Propelled by Inter-Residue Interaction Map Threading.
Bhattacharya S; Roche R; Shuvo MH; Bhattacharya D
Front Mol Biosci; 2021; 8():643752. PubMed ID: 34046429
[TBL] [Abstract][Full Text] [Related]
20. Petascale Homology Search for Structure Prediction.
Lee S; Kim G; Karin EL; Mirdita M; Park S; Chikhi R; Babaian A; Kryshtafovych A; Steinegger M
bioRxiv; 2023 Jul; ():. PubMed ID: 37503235
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]