407 related articles for article (PubMed ID: 29846928)
1. Genomic Identification and Analysis of Specialized Metabolite Biosynthetic Gene Clusters in Plants Using PlantiSMASH.
Kautsar SA; Suarez Duran HG; Medema MH
Methods Mol Biol; 2018; 1795():173-188. PubMed ID: 29846928
[TBL] [Abstract][Full Text] [Related]
2. plantiSMASH: automated identification, annotation and expression analysis of plant biosynthetic gene clusters.
Kautsar SA; Suarez Duran HG; Blin K; Osbourn A; Medema MH
Nucleic Acids Res; 2017 Jul; 45(W1):W55-W63. PubMed ID: 28453650
[TBL] [Abstract][Full Text] [Related]
3. Gene cluster from plant to microbes: Their role in genome architecture, organism's development, specialized metabolism and drug discovery.
Chakraborty P
Biochimie; 2022 Feb; 193():1-15. PubMed ID: 34890733
[TBL] [Abstract][Full Text] [Related]
4. A genetical metabolomics approach for bioprospecting plant biosynthetic gene clusters.
Witjes L; Kooke R; van der Hooft JJJ; de Vos RCH; Keurentjes JJB; Medema MH; Nijveen H
BMC Res Notes; 2019 Apr; 12(1):194. PubMed ID: 30940198
[TBL] [Abstract][Full Text] [Related]
5. Recent development of antiSMASH and other computational approaches to mine secondary metabolite biosynthetic gene clusters.
Blin K; Kim HU; Medema MH; Weber T
Brief Bioinform; 2019 Jul; 20(4):1103-1113. PubMed ID: 29112695
[TBL] [Abstract][Full Text] [Related]
6. Gene clustering in plant specialized metabolism.
Nützmann HW; Osbourn A
Curr Opin Biotechnol; 2014 Apr; 26():91-9. PubMed ID: 24679264
[TBL] [Abstract][Full Text] [Related]
7. Output ordering and prioritisation system (OOPS): ranking biosynthetic gene clusters to enhance bioactive metabolite discovery.
Peña A; Del Carratore F; Cummings M; Takano E; Breitling R
J Ind Microbiol Biotechnol; 2018 Jul; 45(7):615-619. PubMed ID: 29255991
[TBL] [Abstract][Full Text] [Related]
8. Genome-Wide Prediction of Metabolic Enzymes, Pathways, and Gene Clusters in Plants.
Schläpfer P; Zhang P; Wang C; Kim T; Banf M; Chae L; Dreher K; Chavali AK; Nilo-Poyanco R; Bernard T; Kahn D; Rhee SY
Plant Physiol; 2017 Apr; 173(4):2041-2059. PubMed ID: 28228535
[TBL] [Abstract][Full Text] [Related]
9. Transcription Factor Repurposing Offers Insights into Evolution of Biosynthetic Gene Cluster Regulation.
Wang W; Drott M; Greco C; Luciano-Rosario D; Wang P; Keller NP
mBio; 2021 Aug; 12(4):e0139921. PubMed ID: 34281384
[TBL] [Abstract][Full Text] [Related]
10. Bioinformatics tools for the identification of gene clusters that biosynthesize specialized metabolites.
Chavali AK; Rhee SY
Brief Bioinform; 2018 Sep; 19(5):1022-1034. PubMed ID: 28398567
[TBL] [Abstract][Full Text] [Related]
11. The antiSMASH database, a comprehensive database of microbial secondary metabolite biosynthetic gene clusters.
Blin K; Medema MH; Kottmann R; Lee SY; Weber T
Nucleic Acids Res; 2017 Jan; 45(D1):D555-D559. PubMed ID: 27924032
[TBL] [Abstract][Full Text] [Related]
12. BiG-SLiCE: A highly scalable tool maps the diversity of 1.2 million biosynthetic gene clusters.
Kautsar SA; van der Hooft JJJ; de Ridder D; Medema MH
Gigascience; 2021 Jan; 10(1):. PubMed ID: 33438731
[TBL] [Abstract][Full Text] [Related]
13. Computational identification of co-evolving multi-gene modules in microbial biosynthetic gene clusters.
Del Carratore F; Zych K; Cummings M; Takano E; Medema MH; Breitling R
Commun Biol; 2019; 2():83. PubMed ID: 30854475
[TBL] [Abstract][Full Text] [Related]
14. Comprehensive curation and analysis of fungal biosynthetic gene clusters of published natural products.
Li YF; Tsai KJS; Harvey CJB; Li JJ; Ary BE; Berlew EE; Boehman BL; Findley DM; Friant AG; Gardner CA; Gould MP; Ha JH; Lilley BK; McKinstry EL; Nawal S; Parry RC; Rothchild KW; Silbert SD; Tentilucci MD; Thurston AM; Wai RB; Yoon Y; Aiyar RS; Medema MH; Hillenmeyer ME; Charkoudian LK
Fungal Genet Biol; 2016 Apr; 89():18-28. PubMed ID: 26808821
[TBL] [Abstract][Full Text] [Related]
15. Global analysis of biosynthetic gene clusters reveals vast potential of secondary metabolite production in Penicillium species.
Nielsen JC; Grijseels S; Prigent S; Ji B; Dainat J; Nielsen KF; Frisvad JC; Workman M; Nielsen J
Nat Microbiol; 2017 Apr; 2():17044. PubMed ID: 28368369
[TBL] [Abstract][Full Text] [Related]
16. MIBiG 2.0: a repository for biosynthetic gene clusters of known function.
Kautsar SA; Blin K; Shaw S; Navarro-Muñoz JC; Terlouw BR; van der Hooft JJJ; van Santen JA; Tracanna V; Suarez Duran HG; Pascal Andreu V; Selem-Mojica N; Alanjary M; Robinson SL; Lund G; Epstein SC; Sisto AC; Charkoudian LK; Collemare J; Linington RG; Weber T; Medema MH
Nucleic Acids Res; 2020 Jan; 48(D1):D454-D458. PubMed ID: 31612915
[TBL] [Abstract][Full Text] [Related]
17. The rise of operon-like gene clusters in plants.
Boycheva S; Daviet L; Wolfender JL; Fitzpatrick TB
Trends Plant Sci; 2014 Jul; 19(7):447-59. PubMed ID: 24582794
[TBL] [Abstract][Full Text] [Related]
18. The evolution of the gliotoxin biosynthetic gene cluster in Penicillium fungi.
Balamurugan C; Steenwyk JL; Goldman GH; Rokas A
G3 (Bethesda); 2024 May; 14(5):. PubMed ID: 38507596
[TBL] [Abstract][Full Text] [Related]
19. Computational strategies for genome-based natural product discovery and engineering in fungi.
van der Lee TAJ; Medema MH
Fungal Genet Biol; 2016 Apr; 89():29-36. PubMed ID: 26775250
[TBL] [Abstract][Full Text] [Related]
20. Genomic insights into specialized metabolism in the marine actinomycete Salinispora.
Letzel AC; Li J; Amos GCA; Millán-Aguiñaga N; Ginigini J; Abdelmohsen UR; Gaudêncio SP; Ziemert N; Moore BS; Jensen PR
Environ Microbiol; 2017 Sep; 19(9):3660-3673. PubMed ID: 28752948
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]