These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.
6. Reconstruction of biological pathways and metabolic networks from in silico labeled metabolites. Hadadi N; Hafner J; Soh KC; Hatzimanikatis V Biotechnol J; 2017 Jan; 12(1):. PubMed ID: 27897385 [TBL] [Abstract][Full Text] [Related]
7. Classification of chemical reactions and chemoinformatic processing of enzymatic transformations. Latino DA; Aires-de-Sousa J Methods Mol Biol; 2011; 672():325-40. PubMed ID: 20838975 [TBL] [Abstract][Full Text] [Related]
8. A computational analysis of protein interactions in metabolic networks reveals novel enzyme pairs potentially involved in metabolic channeling. Huthmacher C; Gille C; Holzhütter HG J Theor Biol; 2008 Jun; 252(3):456-64. PubMed ID: 17988690 [TBL] [Abstract][Full Text] [Related]
9. Curating a comprehensive set of enzymatic reaction rules for efficient novel biosynthetic pathway design. Ni Z; Stine AE; Tyo KEJ; Broadbelt LJ Metab Eng; 2021 May; 65():79-87. PubMed ID: 33662575 [TBL] [Abstract][Full Text] [Related]
10. Computational assignment of the EC numbers for genomic-scale analysis of enzymatic reactions. Kotera M; Okuno Y; Hattori M; Goto S; Kanehisa M J Am Chem Soc; 2004 Dec; 126(50):16487-98. PubMed ID: 15600352 [TBL] [Abstract][Full Text] [Related]
11. Chemical and genomic evolution of enzyme-catalyzed reaction networks. Kanehisa M FEBS Lett; 2013 Sep; 587(17):2731-7. PubMed ID: 23816707 [TBL] [Abstract][Full Text] [Related]
12. Atom Identifiers Generated by a Neighborhood-Specific Graph Coloring Method Enable Compound Harmonization across Metabolic Databases. Jin H; Mitchell JM; Moseley HNB Metabolites; 2020 Sep; 10(9):. PubMed ID: 32933023 [TBL] [Abstract][Full Text] [Related]
13. Supervised de novo reconstruction of metabolic pathways from metabolome-scale compound sets. Kotera M; Tabei Y; Yamanishi Y; Tokimatsu T; Goto S Bioinformatics; 2013 Jul; 29(13):i135-44. PubMed ID: 23812977 [TBL] [Abstract][Full Text] [Related]
14. FindPrimaryPairs: An efficient algorithm for predicting element-transferring reactant/product pairs in metabolic networks. Steffensen JL; Dufault-Thompson K; Zhang Y PLoS One; 2018; 13(2):e0192891. PubMed ID: 29447218 [TBL] [Abstract][Full Text] [Related]
15. Models for identification of erroneous atom-to-atom mapping of reactions performed by automated algorithms. Muller C; Marcou G; Horvath D; Aires-de-Sousa J; Varnek A J Chem Inf Model; 2012 Dec; 52(12):3116-22. PubMed ID: 23167287 [TBL] [Abstract][Full Text] [Related]
16. An efficient algorithm for de novo predictions of biochemical pathways between chemical compounds. Nakamura M; Hachiya T; Saito Y; Sato K; Sakakibara Y BMC Bioinformatics; 2012; 13 Suppl 17(Suppl 17):S8. PubMed ID: 23282285 [TBL] [Abstract][Full Text] [Related]