These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

177 related articles for article (PubMed ID: 29860504)

  • 1. SV-plaudit: A cloud-based framework for manually curating thousands of structural variants.
    Belyeu JR; Nicholas TJ; Pedersen BS; Sasani TA; Havrilla JM; Kravitz SN; Conway ME; Lohman BK; Quinlan AR; Layer RM
    Gigascience; 2018 Jul; 7(7):. PubMed ID: 29860504
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Parliament2: Accurate structural variant calling at scale.
    Zarate S; Carroll A; Mahmoud M; Krasheninina O; Jun G; Salerno WJ; Schatz MC; Boerwinkle E; Gibbs RA; Sedlazeck FJ
    Gigascience; 2020 Dec; 9(12):. PubMed ID: 33347570
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Structural Variant Detection from Long-Read Sequencing Data with cuteSV.
    Jiang T; Liu S; Cao S; Wang Y
    Methods Mol Biol; 2022; 2493():137-151. PubMed ID: 35751813
    [TBL] [Abstract][Full Text] [Related]  

  • 4. RAPTR-SV: a hybrid method for the detection of structural variants.
    Bickhart DM; Hutchison JL; Xu L; Schnabel RD; Taylor JF; Reecy JM; Schroeder S; Van Tassell CP; Sonstegard TS; Liu GE
    Bioinformatics; 2015 Jul; 31(13):2084-90. PubMed ID: 25686638
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Isomorphic semantic mapping of variant call format (VCF2RDF).
    Penha ED; Iriabho E; Dussaq A; de Oliveira DM; Almeida JS
    Bioinformatics; 2017 Feb; 33(4):547-548. PubMed ID: 27797761
    [TBL] [Abstract][Full Text] [Related]  

  • 6. VCF-Server: A web-based visualization tool for high-throughput variant data mining and management.
    Jiang J; Gu J; Zhao T; Lu H
    Mol Genet Genomic Med; 2019 Jul; 7(7):e00641. PubMed ID: 31127704
    [TBL] [Abstract][Full Text] [Related]  

  • 7. PRINCESS: comprehensive detection of haplotype resolved SNVs, SVs, and methylation.
    Mahmoud M; Doddapaneni H; Timp W; Sedlazeck FJ
    Genome Biol; 2021 Sep; 22(1):268. PubMed ID: 34521442
    [TBL] [Abstract][Full Text] [Related]  

  • 8. SVmine improves structural variation detection by integrative mining of predictions from multiple algorithms.
    Xia Y; Liu Y; Deng M; Xi R
    Bioinformatics; 2017 Nov; 33(21):3348-3354. PubMed ID: 29036467
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Improved VCF normalization for accurate VCF comparison.
    Bayat A; Gaëta B; Ignjatovic A; Parameswaran S
    Bioinformatics; 2017 Apr; 33(7):964-970. PubMed ID: 27993787
    [TBL] [Abstract][Full Text] [Related]  

  • 10. SeqAnt: a web service to rapidly identify and annotate DNA sequence variations.
    Shetty AC; Athri P; Mondal K; Horner VL; Steinberg KM; Patel V; Caspary T; Cutler DJ; Zwick ME
    BMC Bioinformatics; 2010 Sep; 11():471. PubMed ID: 20854673
    [TBL] [Abstract][Full Text] [Related]  

  • 11. MUM&Co: accurate detection of all SV types through whole-genome alignment.
    O'Donnell S; Fischer G
    Bioinformatics; 2020 May; 36(10):3242-3243. PubMed ID: 32096823
    [TBL] [Abstract][Full Text] [Related]  

  • 12. SV-AUTOPILOT: optimized, automated construction of structural variation discovery and benchmarking pipelines.
    Leung WY; Marschall T; Paudel Y; Falquet L; Mei H; Schönhuth A; Maoz Moss TY
    BMC Genomics; 2015 Mar; 16(1):238. PubMed ID: 25887570
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Visualization tools for human structural variations identified by whole-genome sequencing.
    Yokoyama TT; Kasahara M
    J Hum Genet; 2020 Jan; 65(1):49-60. PubMed ID: 31666648
    [TBL] [Abstract][Full Text] [Related]  

  • 14. rMFilter: acceleration of long read-based structure variation calling by chimeric read filtering.
    Liu B; Jiang T; Yiu SM; Li J; Wang Y
    Bioinformatics; 2017 Sep; 33(17):2750-2752. PubMed ID: 28482046
    [TBL] [Abstract][Full Text] [Related]  

  • 15. NPSV-deep: a deep learning method for genotyping structural variants in short read genome sequencing data.
    Linderman MD; Wallace J; van der Heyde A; Wieman E; Brey D; Shi Y; Hansen P; Shamsi Z; Liu J; Gelb BD; Bashir A
    Bioinformatics; 2024 Mar; 40(3):. PubMed ID: 38444093
    [TBL] [Abstract][Full Text] [Related]  

  • 16. PGG.SV: a whole-genome-sequencing-based structural variant resource and data analysis platform.
    Wang Y; Ling Y; Gong J; Zhao X; Zhou H; Xie B; Lou H; Zhuang X; Jin L; ; Fan S; Zhang G; Xu S
    Nucleic Acids Res; 2023 Jan; 51(D1):D1109-D1116. PubMed ID: 36243989
    [TBL] [Abstract][Full Text] [Related]  

  • 17. nanotatoR: a tool for enhanced annotation of genomic structural variants.
    Bhattacharya S; Barseghyan H; Délot EC; Vilain E
    BMC Genomics; 2021 Jan; 22(1):10. PubMed ID: 33407088
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Evaluating nanopore sequencing data processing pipelines for structural variation identification.
    Zhou A; Lin T; Xing J
    Genome Biol; 2019 Nov; 20(1):237. PubMed ID: 31727126
    [TBL] [Abstract][Full Text] [Related]  

  • 19. GenomeVIP: a cloud platform for genomic variant discovery and interpretation.
    Mashl RJ; Scott AD; Huang KL; Wyczalkowski MA; Yoon CJ; Niu B; DeNardo E; Yellapantula VD; Handsaker RE; Chen K; Koboldt DC; Ye K; Fenyö D; Raphael BJ; Wendl MC; Ding L
    Genome Res; 2017 Aug; 27(8):1450-1459. PubMed ID: 28522612
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Hidden biases in germline structural variant detection.
    Khayat MM; Sahraeian SME; Zarate S; Carroll A; Hong H; Pan B; Shi L; Gibbs RA; Mohiyuddin M; Zheng Y; Sedlazeck FJ
    Genome Biol; 2021 Dec; 22(1):347. PubMed ID: 34930391
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 9.