These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

166 related articles for article (PubMed ID: 29868852)

  • 1. LiveKraken--real-time metagenomic classification of illumina data.
    Tausch SH; Strauch B; Andrusch A; Loka TP; Lindner MS; Nitsche A; Renard BY
    Bioinformatics; 2018 Nov; 34(21):3750-3752. PubMed ID: 29868852
    [TBL] [Abstract][Full Text] [Related]  

  • 2. HiLive: real-time mapping of illumina reads while sequencing.
    Lindner MS; Strauch B; Schulze JM; Tausch SH; Dabrowski PW; Nitsche A; Renard BY
    Bioinformatics; 2017 Mar; 33(6):917-319. PubMed ID: 27794555
    [TBL] [Abstract][Full Text] [Related]  

  • 3. BFC: correcting Illumina sequencing errors.
    Li H
    Bioinformatics; 2015 Sep; 31(17):2885-7. PubMed ID: 25953801
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Improving the sensitivity of long read overlap detection using grouped short k-mer matches.
    Du N; Chen J; Sun Y
    BMC Genomics; 2019 Apr; 20(Suppl 2):190. PubMed ID: 30967123
    [TBL] [Abstract][Full Text] [Related]  

  • 5. MetaCache: context-aware classification of metagenomic reads using minhashing.
    Müller A; Hundt C; Hildebrandt A; Hankeln T; Schmidt B
    Bioinformatics; 2017 Dec; 33(23):3740-3748. PubMed ID: 28961782
    [TBL] [Abstract][Full Text] [Related]  

  • 6. AFS: identification and quantification of species composition by metagenomic sequencing.
    Liu Y; Ripp F; Koeppel R; Schmidt H; Hellmann SL; Weber M; Krombholz CF; Schmidt B; Hankeln T
    Bioinformatics; 2017 May; 33(9):1396-1398. PubMed ID: 28453677
    [TBL] [Abstract][Full Text] [Related]  

  • 7. A novel data structure to support ultra-fast taxonomic classification of metagenomic sequences with k-mer signatures.
    Liu X; Yu Y; Liu J; Elliott CF; Qian C; Liu J
    Bioinformatics; 2018 Jan; 34(1):171-178. PubMed ID: 29036588
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Bayexer: an accurate and fast Bayesian demultiplexer for Illumina sequences.
    Yi H; Li Z; Li T; Zhao J
    Bioinformatics; 2015 Dec; 31(24):4000-2. PubMed ID: 26315903
    [TBL] [Abstract][Full Text] [Related]  

  • 9. MetaProb: accurate metagenomic reads binning based on probabilistic sequence signatures.
    Girotto S; Pizzi C; Comin M
    Bioinformatics; 2016 Sep; 32(17):i567-i575. PubMed ID: 27587676
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Studying long 16S rDNA sequences with ultrafast-metagenomic sequence classification using exact alignments (Kraken).
    Valenzuela-González F; Martínez-Porchas M; Villalpando-Canchola E; Vargas-Albores F
    J Microbiol Methods; 2016 Mar; 122():38-42. PubMed ID: 26812576
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Subset selection of high-depth next generation sequencing reads for de novo genome assembly using MapReduce framework.
    Fang CH; Chang YJ; Chung WC; Hsieh PH; Lin CY; Ho JM
    BMC Genomics; 2015; 16 Suppl 12(Suppl 12):S9. PubMed ID: 26678408
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Scalable metagenomics alignment research tool (SMART): a scalable, rapid, and complete search heuristic for the classification of metagenomic sequences from complex sequence populations.
    Lee AY; Lee CS; Van Gelder RN
    BMC Bioinformatics; 2016 Jul; 17():292. PubMed ID: 27465705
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Large scale microbiome profiling in the cloud.
    Valdes C; Stebliankin V; Narasimhan G
    Bioinformatics; 2019 Jul; 35(14):i13-i22. PubMed ID: 31510682
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Binpairs: utilization of Illumina paired-end information for improving efficiency of taxonomic binning of metagenomic sequences.
    Dutta A; Tandon D; Mohammed MH; Bose T; Mande SS
    PLoS One; 2014; 9(12):e114814. PubMed ID: 25551450
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Simulating Illumina metagenomic data with InSilicoSeq.
    Gourlé H; Karlsson-Lindsjö O; Hayer J; Bongcam-Rudloff E
    Bioinformatics; 2019 Feb; 35(3):521-522. PubMed ID: 30016412
    [TBL] [Abstract][Full Text] [Related]  

  • 16. InteMAP: Integrated metagenomic assembly pipeline for NGS short reads.
    Lai B; Wang F; Wang X; Duan L; Zhu H
    BMC Bioinformatics; 2015 Aug; 16():244. PubMed ID: 26250558
    [TBL] [Abstract][Full Text] [Related]  

  • 17. OrfM: a fast open reading frame predictor for metagenomic data.
    Woodcroft BJ; Boyd JA; Tyson GW
    Bioinformatics; 2016 Sep; 32(17):2702-3. PubMed ID: 27153669
    [TBL] [Abstract][Full Text] [Related]  

  • 18. RIEMS: a software pipeline for sensitive and comprehensive taxonomic classification of reads from metagenomics datasets.
    Scheuch M; Höper D; Beer M
    BMC Bioinformatics; 2015 Mar; 16(1):69. PubMed ID: 25886935
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Measuring reproducibility of virus metagenomics analyses using bootstrap samples from FASTQ-files.
    Saremi B; Kohls M; Liebig P; Siebert U; Jung K
    Bioinformatics; 2021 May; 37(8):1068-1075. PubMed ID: 33135067
    [TBL] [Abstract][Full Text] [Related]  

  • 20. ACE: accurate correction of errors using K-mer tries.
    Sheikhizadeh S; de Ridder D
    Bioinformatics; 2015 Oct; 31(19):3216-8. PubMed ID: 26026137
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 9.