176 related articles for article (PubMed ID: 29871588)
1. mySyntenyPortal: an application package to construct websites for synteny block analysis.
Lee J; Lee D; Sim M; Kwon D; Kim J; Ko Y; Kim J
BMC Bioinformatics; 2018 Jun; 19(1):216. PubMed ID: 29871588
[TBL] [Abstract][Full Text] [Related]
2. Synteny Portal: a web-based application portal for synteny block analysis.
Lee J; Hong WY; Cho M; Sim M; Lee D; Ko Y; Kim J
Nucleic Acids Res; 2016 Jul; 44(W1):W35-40. PubMed ID: 27154270
[TBL] [Abstract][Full Text] [Related]
3. A web-based multi-genome synteny viewer for customized data.
Revanna KV; Munro D; Gao A; Chiu CC; Pathak A; Dong Q
BMC Bioinformatics; 2012 Aug; 13():190. PubMed ID: 22856879
[TBL] [Abstract][Full Text] [Related]
4. GSV: a web-based genome synteny viewer for customized data.
Revanna KV; Chiu CC; Bierschank E; Dong Q
BMC Bioinformatics; 2011 Aug; 12():316. PubMed ID: 21810250
[TBL] [Abstract][Full Text] [Related]
5. OrthoClusterDB: an online platform for synteny blocks.
Ng MP; Vergara IA; Frech C; Chen Q; Zeng X; Pei J; Chen N
BMC Bioinformatics; 2009 Jun; 10():192. PubMed ID: 19549318
[TBL] [Abstract][Full Text] [Related]
6. halSynteny: a fast, easy-to-use conserved synteny block construction method for multiple whole-genome alignments.
Krasheninnikova K; Diekhans M; Armstrong J; Dievskii A; Paten B; O'Brien S
Gigascience; 2020 Jun; 9(6):. PubMed ID: 32463100
[TBL] [Abstract][Full Text] [Related]
7. SynMap2 and SynMap3D: web-based whole-genome synteny browsers.
Haug-Baltzell A; Stephens SA; Davey S; Scheidegger CE; Lyons E
Bioinformatics; 2017 Jul; 33(14):2197-2198. PubMed ID: 28334338
[TBL] [Abstract][Full Text] [Related]
8. Substantial genome synteny preservation among woody angiosperm species: comparative genomics of Chinese chestnut (Castanea mollissima) and plant reference genomes.
Staton M; Zhebentyayeva T; Olukolu B; Fang GC; Nelson D; Carlson JE; Abbott AG
BMC Genomics; 2015 Oct; 16():744. PubMed ID: 26438416
[TBL] [Abstract][Full Text] [Related]
9. Screening synteny blocks in pairwise genome comparisons through integer programming.
Tang H; Lyons E; Pedersen B; Schnable JC; Paterson AH; Freeling M
BMC Bioinformatics; 2011 Apr; 12():102. PubMed ID: 21501495
[TBL] [Abstract][Full Text] [Related]
10. Cinteny: flexible analysis and visualization of synteny and genome rearrangements in multiple organisms.
Sinha AU; Meller J
BMC Bioinformatics; 2007 Mar; 8():82. PubMed ID: 17343765
[TBL] [Abstract][Full Text] [Related]
11. SynChro: a fast and easy tool to reconstruct and visualize synteny blocks along eukaryotic chromosomes.
Drillon G; Carbone A; Fischer G
PLoS One; 2014; 9(3):e92621. PubMed ID: 24651407
[TBL] [Abstract][Full Text] [Related]
12. The JAX Synteny Browser for mouse-human comparative genomics.
Kolishovski G; Lamoureux A; Hale P; Richardson JE; Recla JM; Adesanya O; Simons A; Kunde-Ramamoorthy G; Bult CJ
Mamm Genome; 2019 Dec; 30(11-12):353-361. PubMed ID: 31776723
[TBL] [Abstract][Full Text] [Related]
13. DRIMM-Synteny: decomposing genomes into evolutionary conserved segments.
Pham SK; Pevzner PA
Bioinformatics; 2010 Oct; 26(20):2509-16. PubMed ID: 20736338
[TBL] [Abstract][Full Text] [Related]
14. ShinySyn: a Shiny/R application for the interactive visualization and integration of macro- and micro-synteny data.
Xiao Z; Lam HM
Bioinformatics; 2022 Sep; 38(18):4406-4408. PubMed ID: 35866686
[TBL] [Abstract][Full Text] [Related]
15. VGSC2: Second generation vector graph toolkit of genome synteny and collinearity.
Xu Y; Wang Q; Tanon Reyes L; Cheng F; Bi C; Ye N; Wu G
Genomics; 2020 Jan; 112(1):286-288. PubMed ID: 30772429
[TBL] [Abstract][Full Text] [Related]
16. r2cat: synteny plots and comparative assembly.
Husemann P; Stoye J
Bioinformatics; 2010 Feb; 26(4):570-1. PubMed ID: 20015948
[TBL] [Abstract][Full Text] [Related]
17. CrusView: a Java-based visualization platform for comparative genomics analyses in Brassicaceae species.
Chen H; Wang X
Plant Physiol; 2013 Sep; 163(1):354-62. PubMed ID: 23898041
[TBL] [Abstract][Full Text] [Related]
18. Ensembl 2002: accommodating comparative genomics.
Clamp M; Andrews D; Barker D; Bevan P; Cameron G; Chen Y; Clark L; Cox T; Cuff J; Curwen V; Down T; Durbin R; Eyras E; Gilbert J; Hammond M; Hubbard T; Kasprzyk A; Keefe D; Lehvaslaiho H; Iyer V; Melsopp C; Mongin E; Pettett R; Potter S; Rust A; Schmidt E; Searle S; Slater G; Smith J; Spooner W; Stabenau A; Stalker J; Stupka E; Ureta-Vidal A; Vastrik I; Birney E
Nucleic Acids Res; 2003 Jan; 31(1):38-42. PubMed ID: 12519943
[TBL] [Abstract][Full Text] [Related]
19. DiagHunter and GenoPix2D: programs for genomic comparisons, large-scale homology discovery and visualization.
Cannon SB; Kozik A; Chan B; Michelmore R; Young ND
Genome Biol; 2003; 4(10):R68. PubMed ID: 14519203
[TBL] [Abstract][Full Text] [Related]
20. A universal genomic coordinate translator for comparative genomics.
Zamani N; Sundström G; Meadows JR; Höppner MP; Dainat J; Lantz H; Haas BJ; Grabherr MG
BMC Bioinformatics; 2014 Jun; 15():227. PubMed ID: 24976580
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
