214 related articles for article (PubMed ID: 29876842)
1. Mathematical and Simulation-Based Analysis of the Behavior of Admixed Taxa in the Neighbor-Joining Algorithm.
Kim J; Disanto F; Kopelman NM; Rosenberg NA
Bull Math Biol; 2019 Feb; 81(2):452-493. PubMed ID: 29876842
[TBL] [Abstract][Full Text] [Related]
2. The behavior of admixed populations in neighbor-joining inference of population trees.
Kopelman NM; Stone L; Gascuel O; Rosenberg NA
Pac Symp Biocomput; 2013; ():273-84. PubMed ID: 23424132
[TBL] [Abstract][Full Text] [Related]
3. Polyhedral geometry of phylogenetic rogue taxa.
Cueto MA; Matsen FA
Bull Math Biol; 2011 Jun; 73(6):1202-26. PubMed ID: 20640527
[TBL] [Abstract][Full Text] [Related]
4. Clearcut: a fast implementation of relaxed neighbor joining.
Sheneman L; Evans J; Foster JA
Bioinformatics; 2006 Nov; 22(22):2823-4. PubMed ID: 16982706
[TBL] [Abstract][Full Text] [Related]
5. Accuracy guarantees for phylogeny reconstruction algorithms based on balanced minimum evolution.
Bordewich M; Mihaescu R
IEEE/ACM Trans Comput Biol Bioinform; 2013; 10(3):576-83. PubMed ID: 24091392
[TBL] [Abstract][Full Text] [Related]
6. The robustness of two phylogenetic methods: four-taxon simulations reveal a slight superiority of maximum likelihood over neighbor joining.
Huelsenbeck JP
Mol Biol Evol; 1995 Sep; 12(5):843-9. PubMed ID: 7476130
[TBL] [Abstract][Full Text] [Related]
7. Relaxed neighbor joining: a fast distance-based phylogenetic tree construction method.
Evans J; Sheneman L; Foster J
J Mol Evol; 2006 Jun; 62(6):785-92. PubMed ID: 16752216
[TBL] [Abstract][Full Text] [Related]
8. Neighbor-joining uses the optimal weight for net divergence.
Charleston MA; Hendy MD; Penny D
Mol Phylogenet Evol; 1993 Mar; 2(1):6-12. PubMed ID: 8081548
[TBL] [Abstract][Full Text] [Related]
9. Fast NJ-like algorithms to deal with incomplete distance matrices.
Criscuolo A; Gascuel O
BMC Bioinformatics; 2008 Mar; 9():166. PubMed ID: 18366787
[TBL] [Abstract][Full Text] [Related]
10. Optimality of the neighbor joining algorithm and faces of the balanced minimum evolution polytope.
Haws DC; Hodge TL; Yoshida R
Bull Math Biol; 2011 Nov; 73(11):2627-48. PubMed ID: 21373975
[TBL] [Abstract][Full Text] [Related]
11. The MultiFurcating Neighbor-Joining Algorithm for Reconstructing Polytomic Phylogenetic Trees.
Fernández A; Segura-Alabart N; Serratosa F
J Mol Evol; 2023 Dec; 91(6):773-779. PubMed ID: 37865620
[TBL] [Abstract][Full Text] [Related]
12. Incomplete taxon sampling is not a problem for phylogenetic inference.
Rosenberg MS; Kumar S
Proc Natl Acad Sci U S A; 2001 Sep; 98(19):10751-6. PubMed ID: 11526218
[TBL] [Abstract][Full Text] [Related]
13. Improvement of distance-based phylogenetic methods by a local maximum likelihood approach using triplets.
Ranwez V; Gascuel O
Mol Biol Evol; 2002 Nov; 19(11):1952-63. PubMed ID: 12411604
[TBL] [Abstract][Full Text] [Related]
14. A multi-neighbor-joining approach for phylogenetic tree reconstruction and visualization.
Silva AE; Villanueva WJ; Knidel H; Bonato VC; Reis SF; Von Zuben FJ
Genet Mol Res; 2005 Sep; 4(3):525-34. PubMed ID: 16342037
[TBL] [Abstract][Full Text] [Related]
15. Neighbor-joining revealed.
Gascuel O; Steel M
Mol Biol Evol; 2006 Nov; 23(11):1997-2000. PubMed ID: 16877499
[TBL] [Abstract][Full Text] [Related]
16. Phylogeny inference based on spectral graph clustering.
Zhang SB; Zhou SY; He JG; Lai JH
J Comput Biol; 2011 Apr; 18(4):627-37. PubMed ID: 21352066
[TBL] [Abstract][Full Text] [Related]
17. Identifying and reconstructing lateral transfers from distance matrices by combining the minimum contradiction method and neighbor-net.
Thuillard M; Moulton V
J Bioinform Comput Biol; 2011 Aug; 9(4):453-70. PubMed ID: 21776603
[TBL] [Abstract][Full Text] [Related]
18. A signal-to-noise analysis of phylogeny estimation by neighbor-joining: Insufficiency of polynomial length sequences.
Lacey MR; Chang JT
Math Biosci; 2006 Feb; 199(2):188-215. PubMed ID: 16412478
[TBL] [Abstract][Full Text] [Related]
19. Combinatorics of distance-based tree inference.
Pardi F; Gascuel O
Proc Natl Acad Sci U S A; 2012 Oct; 109(41):16443-8. PubMed ID: 23012403
[TBL] [Abstract][Full Text] [Related]
20. Fast and accurate phylogeny reconstruction algorithms based on the minimum-evolution principle.
Desper R; Gascuel O
J Comput Biol; 2002; 9(5):687-705. PubMed ID: 12487758
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]