128 related articles for article (PubMed ID: 29882166)
1. Co-fuse: a new class discovery analysis tool to identify and prioritize recurrent fusion genes from RNA-sequencing data.
Paisitkriangkrai S; Quek K; Nievergall E; Jabbour A; Zannettino A; Kok CH
Mol Genet Genomics; 2018 Oct; 293(5):1217-1229. PubMed ID: 29882166
[TBL] [Abstract][Full Text] [Related]
2. ChimPipe: accurate detection of fusion genes and transcription-induced chimeras from RNA-seq data.
Rodríguez-Martín B; Palumbo E; Marco-Sola S; Griebel T; Ribeca P; Alonso G; Rastrojo A; Aguado B; Guigó R; Djebali S
BMC Genomics; 2017 Jan; 18(1):7. PubMed ID: 28049418
[TBL] [Abstract][Full Text] [Related]
3. Clinker: visualizing fusion genes detected in RNA-seq data.
Schmidt BM; Davidson NM; Hawkins ADK; Bartolo R; Majewski IJ; Ekert PG; Oshlack A
Gigascience; 2018 Jul; 7(7):. PubMed ID: 29982439
[TBL] [Abstract][Full Text] [Related]
4. Fusion gene detection by RNA-sequencing complements diagnostics of acute myeloid leukemia and identifies recurring
Kerbs P; Vosberg S; Krebs S; Graf A; Blum H; Swoboda A; Batcha AMN; Mansmann U; Metzler D; Heckman CA; Herold T; Greif PA
Haematologica; 2022 Jan; 107(1):100-111. PubMed ID: 34134471
[TBL] [Abstract][Full Text] [Related]
5. TAP: a targeted clinical genomics pipeline for detecting transcript variants using RNA-seq data.
Chiu R; Nip KM; Chu J; Birol I
BMC Med Genomics; 2018 Sep; 11(1):79. PubMed ID: 30200994
[TBL] [Abstract][Full Text] [Related]
6. ArtiFuse-computational validation of fusion gene detection tools without relying on simulated reads.
Sorn P; Holtsträter C; Löwer M; Sahin U; Weber D
Bioinformatics; 2020 Jan; 36(2):373-379. PubMed ID: 31373612
[TBL] [Abstract][Full Text] [Related]
7. A fast detection of fusion genes from paired-end RNA-seq data.
Vu TN; Deng W; Trac QT; Calza S; Hwang W; Pawitan Y
BMC Genomics; 2018 Nov; 19(1):786. PubMed ID: 30382840
[TBL] [Abstract][Full Text] [Related]
8. InFusion: Advancing Discovery of Fusion Genes and Chimeric Transcripts from Deep RNA-Sequencing Data.
Okonechnikov K; Imai-Matsushima A; Paul L; Seitz A; Meyer TF; Garcia-Alcalde F
PLoS One; 2016; 11(12):e0167417. PubMed ID: 27907167
[TBL] [Abstract][Full Text] [Related]
9. FuGePrior: A novel gene fusion prioritization algorithm based on accurate fusion structure analysis in cancer RNA-seq samples.
Paciello G; Ficarra E
BMC Bioinformatics; 2017 Jan; 18(1):58. PubMed ID: 28114882
[TBL] [Abstract][Full Text] [Related]
10. A deconvolution method and its application in analyzing the cellular fractions in acute myeloid leukemia samples.
Li H; Sharma A; Ming W; Sun X; Liu H
BMC Genomics; 2020 Sep; 21(1):652. PubMed ID: 32967610
[TBL] [Abstract][Full Text] [Related]
11. FuSpot: a web-based tool for visual evaluation of fusion candidates.
Killian JA; Topiwala TM; Pelletier AR; Frankhouser DE; Yan PS; Bundschuh R
BMC Genomics; 2018 Feb; 19(1):139. PubMed ID: 29439649
[TBL] [Abstract][Full Text] [Related]
12. annoFuse: an R Package to annotate, prioritize, and interactively explore putative oncogenic RNA fusions.
Gaonkar KS; Marini F; Rathi KS; Jain P; Zhu Y; Chimicles NA; Brown MA; Naqvi AS; Zhang B; Storm PB; Maris JM; Raman P; Resnick AC; Strauch K; Taroni JN; Rokita JL
BMC Bioinformatics; 2020 Dec; 21(1):577. PubMed ID: 33317447
[TBL] [Abstract][Full Text] [Related]
13. Genome-wide co-occupancy of AML1-ETO and N-CoR defines the t(8;21) AML signature in leukemic cells.
Trombly DJ; Whitfield TW; Padmanabhan S; Gordon JA; Lian JB; van Wijnen AJ; Zaidi SK; Stein JL; Stein GS
BMC Genomics; 2015 Apr; 16(1):309. PubMed ID: 25928846
[TBL] [Abstract][Full Text] [Related]
14. Read-Split-Run: an improved bioinformatics pipeline for identification of genome-wide non-canonical spliced regions using RNA-Seq data.
Bai Y; Kinne J; Donham B; Jiang F; Ding L; Hassler JR; Kaufman RJ
BMC Genomics; 2016 Aug; 17 Suppl 7(Suppl 7):503. PubMed ID: 27556805
[TBL] [Abstract][Full Text] [Related]
15. EPIG-Seq: extracting patterns and identifying co-expressed genes from RNA-Seq data.
Li J; Bushel PR
BMC Genomics; 2016 Mar; 17():255. PubMed ID: 27004791
[TBL] [Abstract][Full Text] [Related]
16. Molecular Basis and Targeted Inhibition of CBFβ-SMMHC Acute Myeloid Leukemia.
Castilla LH; Bushweller JH
Adv Exp Med Biol; 2017; 962():229-244. PubMed ID: 28299661
[TBL] [Abstract][Full Text] [Related]
17. FuMa: reporting overlap in RNA-seq detected fusion genes.
Hoogstrate Y; Böttcher R; Hiltemann S; van der Spek PJ; Jenster G; Stubbs AP
Bioinformatics; 2016 Apr; 32(8):1226-8. PubMed ID: 26656567
[TBL] [Abstract][Full Text] [Related]
18. ChimerDB 3.0: an enhanced database for fusion genes from cancer transcriptome and literature data mining.
Lee M; Lee K; Yu N; Jang I; Choi I; Kim P; Jang YE; Kim B; Kim S; Lee B; Kang J; Lee S
Nucleic Acids Res; 2017 Jan; 45(D1):D784-D789. PubMed ID: 27899563
[TBL] [Abstract][Full Text] [Related]
19. FusionMap: detecting fusion genes from next-generation sequencing data at base-pair resolution.
Ge H; Liu K; Juan T; Fang F; Newman M; Hoeck W
Bioinformatics; 2011 Jul; 27(14):1922-8. PubMed ID: 21593131
[TBL] [Abstract][Full Text] [Related]
20.
; ; . PubMed ID:
[No Abstract] [Full Text] [Related]
[Next] [New Search]
