These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

207 related articles for article (PubMed ID: 29902968)

  • 21. GapFiller: a de novo assembly approach to fill the gap within paired reads.
    Nadalin F; Vezzi F; Policriti A
    BMC Bioinformatics; 2012; 13 Suppl 14(Suppl 14):S8. PubMed ID: 23095524
    [TBL] [Abstract][Full Text] [Related]  

  • 22. libgapmis: extending short-read alignments.
    Alachiotis N; Berger S; Flouri T; Pissis SP; Stamatakis A
    BMC Bioinformatics; 2013; 14 Suppl 11(Suppl 11):S4. PubMed ID: 24564250
    [TBL] [Abstract][Full Text] [Related]  

  • 23. An accurate algorithm for the detection of DNA fragments from dilution pool sequencing experiments.
    Bansal V
    Bioinformatics; 2018 Jan; 34(1):155-162. PubMed ID: 29036419
    [TBL] [Abstract][Full Text] [Related]  

  • 24. LSCplus: a fast solution for improving long read accuracy by short read alignment.
    Hu R; Sun G; Sun X
    BMC Bioinformatics; 2016 Nov; 17(1):451. PubMed ID: 27829364
    [TBL] [Abstract][Full Text] [Related]  

  • 25. Kart: a divide-and-conquer algorithm for NGS read alignment.
    Lin HN; Hsu WL
    Bioinformatics; 2017 Aug; 33(15):2281-2287. PubMed ID: 28379292
    [TBL] [Abstract][Full Text] [Related]  

  • 26. pblat: a multithread blat algorithm speeding up aligning sequences to genomes.
    Wang M; Kong L
    BMC Bioinformatics; 2019 Jan; 20(1):28. PubMed ID: 30646844
    [TBL] [Abstract][Full Text] [Related]  

  • 27. Minimap2: pairwise alignment for nucleotide sequences.
    Li H
    Bioinformatics; 2018 Sep; 34(18):3094-3100. PubMed ID: 29750242
    [TBL] [Abstract][Full Text] [Related]  

  • 28. MICA: A fast short-read aligner that takes full advantage of Many Integrated Core Architecture (MIC).
    Luo R; Cheung J; Wu E; Wang H; Chan SH; Law WC; He G; Yu C; Liu CM; Zhou D; Li Y; Li R; Wang J; Zhu X; Peng S; Lam TW
    BMC Bioinformatics; 2015; 16 Suppl 7(Suppl 7):S10. PubMed ID: 25952019
    [TBL] [Abstract][Full Text] [Related]  

  • 29. STR-realigner: a realignment method for short tandem repeat regions.
    Kojima K; Kawai Y; Misawa K; Mimori T; Nagasaki M
    BMC Genomics; 2016 Dec; 17(1):991. PubMed ID: 27912743
    [TBL] [Abstract][Full Text] [Related]  

  • 30. Large scale sequence alignment via efficient inference in generative models.
    Mongia M; Shen C; Davoodi AG; Marçais G; Mohimani H
    Sci Rep; 2023 May; 13(1):7285. PubMed ID: 37142645
    [TBL] [Abstract][Full Text] [Related]  

  • 31. RandAL: a randomized approach to aligning DNA sequences to reference genomes.
    Vo NS; Tran Q; Niraula N; Phan V
    BMC Genomics; 2014; 15 Suppl 5(Suppl 5):S2. PubMed ID: 25081493
    [TBL] [Abstract][Full Text] [Related]  

  • 32. NeatFreq: reference-free data reduction and coverage normalization for De Novo sequence assembly.
    McCorrison JM; Venepally P; Singh I; Fouts DE; Lasken RS; Methé BA
    BMC Bioinformatics; 2014 Nov; 15(1):357. PubMed ID: 25407910
    [TBL] [Abstract][Full Text] [Related]  

  • 33. Btrim: a fast, lightweight adapter and quality trimming program for next-generation sequencing technologies.
    Kong Y
    Genomics; 2011 Aug; 98(2):152-3. PubMed ID: 21651976
    [TBL] [Abstract][Full Text] [Related]  

  • 34. ADEPT, a dynamic next generation sequencing data error-detection program with trimming.
    Feng S; Lo CC; Li PE; Chain PS
    BMC Bioinformatics; 2016 Feb; 17():109. PubMed ID: 26928302
    [TBL] [Abstract][Full Text] [Related]  

  • 35. Rapid and precise alignment of raw reads against redundant databases with KMA.
    Clausen PTLC; Aarestrup FM; Lund O
    BMC Bioinformatics; 2018 Aug; 19(1):307. PubMed ID: 30157759
    [TBL] [Abstract][Full Text] [Related]  

  • 36. HISEA: HIerarchical SEed Aligner for PacBio data.
    Khiste N; Ilie L
    BMC Bioinformatics; 2017 Dec; 18(1):564. PubMed ID: 29258419
    [TBL] [Abstract][Full Text] [Related]  

  • 37. GRASS: a generic algorithm for scaffolding next-generation sequencing assemblies.
    Gritsenko AA; Nijkamp JF; Reinders MJ; de Ridder D
    Bioinformatics; 2012 Jun; 28(11):1429-37. PubMed ID: 22492642
    [TBL] [Abstract][Full Text] [Related]  

  • 38. Anatomy of a hash-based long read sequence mapping algorithm for next generation DNA sequencing.
    Misra S; Agrawal A; Liao WK; Choudhary A
    Bioinformatics; 2011 Jan; 27(2):189-95. PubMed ID: 21088030
    [TBL] [Abstract][Full Text] [Related]  

  • 39. GRIM-Filter: Fast seed location filtering in DNA read mapping using processing-in-memory technologies.
    Kim JS; Senol Cali D; Xin H; Lee D; Ghose S; Alser M; Hassan H; Ergin O; Alkan C; Mutlu O
    BMC Genomics; 2018 May; 19(Suppl 2):89. PubMed ID: 29764378
    [TBL] [Abstract][Full Text] [Related]  

  • 40. A bit-parallel dynamic programming algorithm suitable for DNA sequence alignment.
    Kimura K; Koike A; Nakai K
    J Bioinform Comput Biol; 2012 Aug; 10(4):1250002. PubMed ID: 22809415
    [TBL] [Abstract][Full Text] [Related]  

    [Previous]   [Next]    [New Search]
    of 11.