BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

173 related articles for article (PubMed ID: 29914482)

  • 1. RACIPE: a computational tool for modeling gene regulatory circuits using randomization.
    Huang B; Jia D; Feng J; Levine H; Onuchic JN; Lu M
    BMC Syst Biol; 2018 Jun; 12(1):74. PubMed ID: 29914482
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Interrogating the topological robustness of gene regulatory circuits by randomization.
    Huang B; Lu M; Jia D; Ben-Jacob E; Levine H; Onuchic JN
    PLoS Comput Biol; 2017 Mar; 13(3):e1005456. PubMed ID: 28362798
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Role of noise and parametric variation in the dynamics of gene regulatory circuits.
    Kohar V; Lu M
    NPJ Syst Biol Appl; 2018; 4():40. PubMed ID: 30416751
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Decoding the mechanisms underlying cell-fate decision-making during stem cell differentiation by random circuit perturbation.
    Huang B; Lu M; Galbraith M; Levine H; Onuchic JN; Jia D
    J R Soc Interface; 2020 Aug; 17(169):20200500. PubMed ID: 32781932
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Testing the gene expression classification of the EMT spectrum.
    Jia D; George JT; Tripathi SC; Kundnani DL; Lu M; Hanash SM; Onuchic JN; Jolly MK; Levine H
    Phys Biol; 2019 Jan; 16(2):025002. PubMed ID: 30557866
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Assessing biological network dynamics: comparing numerical simulations with analytical decomposition of parameter space.
    Hari K; Duncan W; Ibrahim MA; Jolly MK; Cummins B; Gedeon T
    NPJ Syst Biol Appl; 2023 Jul; 9(1):29. PubMed ID: 37400474
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Classification-Based Inference of Dynamical Models of Gene Regulatory Networks.
    Fehr DA; Handzlik JE; Manu ; Loh YL
    G3 (Bethesda); 2019 Dec; 9(12):4183-4195. PubMed ID: 31624138
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Combining a Toggle Switch and a Repressilator within the AC-DC Circuit Generates Distinct Dynamical Behaviors.
    Perez-Carrasco R; Barnes CP; Schaerli Y; Isalan M; Briscoe J; Page KM
    Cell Syst; 2018 Apr; 6(4):521-530.e3. PubMed ID: 29574056
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Gene Circuit Explorer (GeneEx): an interactive web-app for visualizing, simulating and analyzing gene regulatory circuits.
    Kohar V; Gordin D; Katebi A; Levine H; Onuchic JN; Lu M
    Bioinformatics; 2021 Jun; 37(9):1327-1329. PubMed ID: 33279968
    [TBL] [Abstract][Full Text] [Related]  

  • 10. SELANSI: a toolbox for simulation of stochastic gene regulatory networks.
    Pájaro M; Otero-Muras I; Vázquez C; Alonso AA
    Bioinformatics; 2018 Mar; 34(5):893-895. PubMed ID: 29040384
    [TBL] [Abstract][Full Text] [Related]  

  • 11. SYNBADm: a tool for optimization-based automated design of synthetic gene circuits.
    Otero-Muras I; Henriques D; Banga JR
    Bioinformatics; 2016 Nov; 32(21):3360-3362. PubMed ID: 27402908
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Identification, visualization, statistical analysis and mathematical modeling of high-feedback loops in gene regulatory networks.
    Nordick B; Hong T
    BMC Bioinformatics; 2021 Oct; 22(1):481. PubMed ID: 34607562
    [TBL] [Abstract][Full Text] [Related]  

  • 13. BioTapestry: a tool to visualize the dynamic properties of gene regulatory networks.
    Longabaugh WJ
    Methods Mol Biol; 2012; 786():359-94. PubMed ID: 21938637
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Toward Modeling Context-Specific EMT Regulatory Networks Using Temporal Single Cell RNA-Seq Data.
    Ramirez D; Kohar V; Lu M
    Front Mol Biosci; 2020; 7():54. PubMed ID: 32391378
    [TBL] [Abstract][Full Text] [Related]  

  • 15. A data-driven optimization method for coarse-graining gene regulatory networks.
    Caranica C; Lu M
    iScience; 2023 Feb; 26(2):105927. PubMed ID: 36698721
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Functional tunability of biological circuits from additional toggle switches.
    Shi C; Zhou T; Yuan Z
    IET Syst Biol; 2013 Oct; 7(5):126-34. PubMed ID: 24067412
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Function does not follow form in gene regulatory circuits.
    Payne JL; Wagner A
    Sci Rep; 2015 Aug; 5():13015. PubMed ID: 26290154
    [TBL] [Abstract][Full Text] [Related]  

  • 18. A model of gene expression based on random dynamical systems reveals modularity properties of gene regulatory networks.
    Antoneli F; Ferreira RC; Briones MR
    Math Biosci; 2016 Jun; 276():82-100. PubMed ID: 27036626
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Extreme learning machines for reverse engineering of gene regulatory networks from expression time series.
    Rubiolo M; Milone DH; Stegmayer G
    Bioinformatics; 2018 Apr; 34(7):1253-1260. PubMed ID: 29182723
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Implicit methods for qualitative modeling of gene regulatory networks.
    Garg A; Mohanram K; De Micheli G; Xenarios I
    Methods Mol Biol; 2012; 786():397-443. PubMed ID: 21938638
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 9.