These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.
155 related articles for article (PubMed ID: 29938118)
1. An Overview of Network-Based and -Free Approaches for Stochastic Simulation of Biochemical Systems. Gupta A; Mendes P Computation (Basel); 2018 Mar; 6(1):. PubMed ID: 29938118 [TBL] [Abstract][Full Text] [Related]
4. Discrete-time stochastic modeling and simulation of biochemical networks. Sandmann W Comput Biol Chem; 2008 Aug; 32(4):292-7. PubMed ID: 18499525 [TBL] [Abstract][Full Text] [Related]
5. A Hybrid of the Chemical Master Equation and the Gillespie Algorithm for Efficient Stochastic Simulations of Sub-Networks. Albert J PLoS One; 2016; 11(3):e0149909. PubMed ID: 26930199 [TBL] [Abstract][Full Text] [Related]
6. The efficiency of reactant site sampling in network-free simulation of rule-based models for biochemical systems. Yang J; Hlavacek WS Phys Biol; 2011 Oct; 8(5):055009. PubMed ID: 21832806 [TBL] [Abstract][Full Text] [Related]
7. Generalizing Gillespie's Direct Method to Enable Network-Free Simulations. Suderman R; Mitra ED; Lin YT; Erickson KE; Feng S; Hlavacek WS Bull Math Biol; 2019 Aug; 81(8):2822-2848. PubMed ID: 29594824 [TBL] [Abstract][Full Text] [Related]
8. An equation-free probabilistic steady-state approximation: dynamic application to the stochastic simulation of biochemical reaction networks. Salis H; Kaznessis YN J Chem Phys; 2005 Dec; 123(21):214106. PubMed ID: 16356038 [TBL] [Abstract][Full Text] [Related]
9. Stochastic approaches in systems biology. Ullah M; Wolkenhauer O Wiley Interdiscip Rev Syst Biol Med; 2010; 2(4):385-397. PubMed ID: 20836037 [TBL] [Abstract][Full Text] [Related]
10. Rule-Based Modeling Using Wildcards in the Smoldyn Simulator. Andrews SS Methods Mol Biol; 2019; 1945():179-202. PubMed ID: 30945247 [TBL] [Abstract][Full Text] [Related]
11. Using Equation-Free Computation to Accelerate Network-Free Stochastic Simulation of Chemical Kinetics. Lin YT; Chylek LA; Lemons NW; Hlavacek WS J Phys Chem B; 2018 Jun; 122(24):6351-6356. PubMed ID: 29851484 [TBL] [Abstract][Full Text] [Related]
12. Mechanisms of stochastic focusing and defocusing in biological reaction networks: insight from accurate chemical master equation (ACME) solutions. Gursoy G; Terebus A; Youfang Cao ; Jie Liang Annu Int Conf IEEE Eng Med Biol Soc; 2016 Aug; 2016():1480-1483. PubMed ID: 28268606 [TBL] [Abstract][Full Text] [Related]
15. Simulation and inference algorithms for stochastic biochemical reaction networks: from basic concepts to state-of-the-art. Warne DJ; Baker RE; Simpson MJ J R Soc Interface; 2019 Feb; 16(151):20180943. PubMed ID: 30958205 [TBL] [Abstract][Full Text] [Related]
16. A multi-time-scale analysis of chemical reaction networks: II. Stochastic systems. Kan X; Lee CH; Othmer HG J Math Biol; 2016 Nov; 73(5):1081-1129. PubMed ID: 26945582 [TBL] [Abstract][Full Text] [Related]
17. Accurate hybrid stochastic simulation of a system of coupled chemical or biochemical reactions. Salis H; Kaznessis Y J Chem Phys; 2005 Feb; 122(5):54103. PubMed ID: 15740306 [TBL] [Abstract][Full Text] [Related]
18. Stochastic model simulation using Kronecker product analysis and Zassenhaus formula approximation. Caglar MU; Pal R IEEE/ACM Trans Comput Biol Bioinform; 2013; 10(5):1125-36. PubMed ID: 24384703 [TBL] [Abstract][Full Text] [Related]