146 related articles for article (PubMed ID: 29939210)
1. SOPanG: online text searching over a pan-genome.
Cislak A; Grabowski S; Holub J
Bioinformatics; 2018 Dec; 34(24):4290-4292. PubMed ID: 29939210
[TBL] [Abstract][Full Text] [Related]
2. A space and time-efficient index for the compacted colored de Bruijn graph.
Almodaresi F; Sarkar H; Srivastava A; Patro R
Bioinformatics; 2018 Jul; 34(13):i169-i177. PubMed ID: 29949982
[TBL] [Abstract][Full Text] [Related]
3. FMtree: a fast locating algorithm of FM-indexes for genomic data.
Cheng H; Wu M; Xu Y
Bioinformatics; 2018 Feb; 34(3):416-424. PubMed ID: 28968761
[TBL] [Abstract][Full Text] [Related]
4. Fast and compact matching statistics analytics.
Cunial F; Denas O; Belazzougui D
Bioinformatics; 2022 Mar; 38(7):1838-1845. PubMed ID: 35134833
[TBL] [Abstract][Full Text] [Related]
5. Efficient privacy-preserving string search and an application in genomics.
Shimizu K; Nuida K; Rätsch G
Bioinformatics; 2016 Jun; 32(11):1652-61. PubMed ID: 27153731
[TBL] [Abstract][Full Text] [Related]
6. NeSSie: a tool for the identification of approximate DNA sequence symmetries.
Berselli M; Lavezzo E; Toppo S
Bioinformatics; 2018 Jul; 34(14):2503-2505. PubMed ID: 29522153
[TBL] [Abstract][Full Text] [Related]
7. sBWT: memory efficient implementation of the hardware-acceleration-friendly Schindler transform for the fast biological sequence mapping.
Chang CH; Chou MT; Wu YC; Hong TW; Li YL; Yang CH; Hung JH
Bioinformatics; 2016 Nov; 32(22):3498-3500. PubMed ID: 27412087
[TBL] [Abstract][Full Text] [Related]
8. copMEM: finding maximal exact matches via sampling both genomes.
Grabowski S; Bieniecki W
Bioinformatics; 2019 Feb; 35(4):677-678. PubMed ID: 30060142
[TBL] [Abstract][Full Text] [Related]
9. BinDash, software for fast genome distance estimation on a typical personal laptop.
Zhao X
Bioinformatics; 2019 Feb; 35(4):671-673. PubMed ID: 30052763
[TBL] [Abstract][Full Text] [Related]
10. ppsPCP: a plant presence/absence variants scanner and pan-genome construction pipeline.
Tahir Ul Qamar M; Zhu X; Xing F; Chen LL
Bioinformatics; 2019 Oct; 35(20):4156-4158. PubMed ID: 30851098
[TBL] [Abstract][Full Text] [Related]
11. Improved genomic island predictions with IslandPath-DIMOB.
Bertelli C; Brinkman FSL
Bioinformatics; 2018 Jul; 34(13):2161-2167. PubMed ID: 29905770
[TBL] [Abstract][Full Text] [Related]
12. PanTools: representation, storage and exploration of pan-genomic data.
Sheikhizadeh S; Schranz ME; Akdel M; de Ridder D; Smit S
Bioinformatics; 2016 Sep; 32(17):i487-i493. PubMed ID: 27587666
[TBL] [Abstract][Full Text] [Related]
13. TCGA-assembler 2: software pipeline for retrieval and processing of TCGA/CPTAC data.
Wei L; Jin Z; Yang S; Xu Y; Zhu Y; Ji Y
Bioinformatics; 2018 May; 34(9):1615-1617. PubMed ID: 29272348
[TBL] [Abstract][Full Text] [Related]
14. AGILE: an assembled genome mining pipeline.
Hughes GM; Teeling EC
Bioinformatics; 2019 Apr; 35(7):1252-1254. PubMed ID: 30184049
[TBL] [Abstract][Full Text] [Related]
15. RabbitMash: accelerating hash-based genome analysis on modern multi-core architectures.
Yin Z; Xu X; Zhang J; Wei Y; Schmidt B; Liu W
Bioinformatics; 2021 May; 37(6):873-875. PubMed ID: 32845281
[TBL] [Abstract][Full Text] [Related]
16. BioJava 5: A community driven open-source bioinformatics library.
Lafita A; Bliven S; Prlić A; Guzenko D; Rose PW; Bradley A; Pavan P; Myers-Turnbull D; Valasatava Y; Heuer M; Larson M; Burley SK; Duarte JM
PLoS Comput Biol; 2019 Feb; 15(2):e1006791. PubMed ID: 30735498
[TBL] [Abstract][Full Text] [Related]
17. Pan-Tetris: an interactive visualisation for Pan-genomes.
Hennig A; Bernhardt J; Nieselt K
BMC Bioinformatics; 2015; 16 Suppl 11(Suppl 11):S3. PubMed ID: 26328606
[TBL] [Abstract][Full Text] [Related]
18. simuG: a general-purpose genome simulator.
Yue JX; Liti G
Bioinformatics; 2019 Nov; 35(21):4442-4444. PubMed ID: 31116378
[TBL] [Abstract][Full Text] [Related]
19. andi: fast and accurate estimation of evolutionary distances between closely related genomes.
Haubold B; Klötzl F; Pfaffelhuber P
Bioinformatics; 2015 Apr; 31(8):1169-75. PubMed ID: 25504847
[TBL] [Abstract][Full Text] [Related]
20. PRAWNS: compact pan-genomic features for whole-genome population genomics.
Javkar K; Rand H; Strain E; Pop M
Bioinformatics; 2023 Jan; 39(1):. PubMed ID: 36579850
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
