These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

177 related articles for article (PubMed ID: 29941871)

  • 1. DeTiN: overcoming tumor-in-normal contamination.
    Taylor-Weiner A; Stewart C; Giordano T; Miller M; Rosenberg M; Macbeth A; Lennon N; Rheinbay E; Landau DA; Wu CJ; Getz G
    Nat Methods; 2018 Jul; 15(7):531-534. PubMed ID: 29941871
    [TBL] [Abstract][Full Text] [Related]  

  • 2. A computational approach to distinguish somatic vs. germline origin of genomic alterations from deep sequencing of cancer specimens without a matched normal.
    Sun JX; He Y; Sanford E; Montesion M; Frampton GM; Vignot S; Soria JC; Ross JS; Miller VA; Stephens PJ; Lipson D; Yelensky R
    PLoS Comput Biol; 2018 Feb; 14(2):e1005965. PubMed ID: 29415044
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Evaluating somatic tumor mutation detection without matched normal samples.
    Teer JK; Zhang Y; Chen L; Welsh EA; Cress WD; Eschrich SA; Berglund AE
    Hum Genomics; 2017 Sep; 11(1):22. PubMed ID: 28870239
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Conpair: concordance and contamination estimator for matched tumor-normal pairs.
    Bergmann EA; Chen BJ; Arora K; Vacic V; Zody MC
    Bioinformatics; 2016 Oct; 32(20):3196-3198. PubMed ID: 27354699
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Annotation of Variant Data from High-Throughput DNA Sequencing from Tumor Specimens: Filtering Strategies to Identify Driver Mutations.
    Sun S; Thorson JA; Murray SS
    Methods Mol Biol; 2019; 1908():49-60. PubMed ID: 30649720
    [TBL] [Abstract][Full Text] [Related]  

  • 6. ISOWN: accurate somatic mutation identification in the absence of normal tissue controls.
    Kalatskaya I; Trinh QM; Spears M; McPherson JD; Bartlett JMS; Stein L
    Genome Med; 2017 Jun; 9(1):59. PubMed ID: 28659176
    [TBL] [Abstract][Full Text] [Related]  

  • 7. novoBreak: local assembly for breakpoint detection in cancer genomes.
    Chong Z; Ruan J; Gao M; Zhou W; Chen T; Fan X; Ding L; Lee AY; Boutros P; Chen J; Chen K
    Nat Methods; 2017 Jan; 14(1):65-67. PubMed ID: 27892959
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Pitfalls of improperly procured adjacent non-neoplastic tissue for somatic mutation analysis using next-generation sequencing.
    Wei L; Papanicolau-Sengos A; Liu S; Wang J; Conroy JM; Glenn ST; Brese E; Hu Q; Miles KM; Burgher B; Qin M; Head K; Omilian AR; Bshara W; Krolewski J; Trump DL; Johnson CS; Morrison CD
    BMC Med Genomics; 2016 Oct; 9(1):64. PubMed ID: 27756300
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Next-Generation Sequencing of Circulating Tumor DNA for Early Cancer Detection.
    Aravanis AM; Lee M; Klausner RD
    Cell; 2017 Feb; 168(4):571-574. PubMed ID: 28187279
    [TBL] [Abstract][Full Text] [Related]  

  • 10. A method to reduce ancestry related germline false positives in tumor only somatic variant calling.
    Halperin RF; Carpten JD; Manojlovic Z; Aldrich J; Keats J; Byron S; Liang WS; Russell M; Enriquez D; Claasen A; Cherni I; Awuah B; Oppong J; Wicha MS; Newman LA; Jaigge E; Kim S; Craig DW
    BMC Med Genomics; 2017 Oct; 10(1):61. PubMed ID: 29052513
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Validation of OncoPanel: A Targeted Next-Generation Sequencing Assay for the Detection of Somatic Variants in Cancer.
    Garcia EP; Minkovsky A; Jia Y; Ducar MD; Shivdasani P; Gong X; Ligon AH; Sholl LM; Kuo FC; MacConaill LE; Lindeman NI; Dong F
    Arch Pathol Lab Med; 2017 Jun; 141(6):751-758. PubMed ID: 28557599
    [TBL] [Abstract][Full Text] [Related]  

  • 12. OutLyzer: software for extracting low-allele-frequency tumor mutations from sequencing background noise in clinical practice.
    Muller E; Goardon N; Brault B; Rousselin A; Paimparay G; Legros A; Fouillet R; Bruet O; Tranchant A; Domin F; San C; Quesnelle C; Frebourg T; Ricou A; Krieger S; Vaur D; Castera L
    Oncotarget; 2016 Nov; 7(48):79485-79493. PubMed ID: 27825131
    [TBL] [Abstract][Full Text] [Related]  

  • 13. A Pipeline for ctDNA Detection Following Primary Tumor Profiling Using a Cancer-Related Gene Sequencing Panel.
    Nishizuka SS; Sato KA; Hachiya T
    Methods Mol Biol; 2019; 1908():229-241. PubMed ID: 30649732
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Inferring Sequential Order of Somatic Mutations during Tumorgenesis based on Markov Chain Model.
    Kang H; Cho KH; Zhang XD; Zeng T; Chen L
    IEEE/ACM Trans Comput Biol Bioinform; 2015; 12(5):1094-103. PubMed ID: 26451822
    [TBL] [Abstract][Full Text] [Related]  

  • 15. More Pitfalls Related to Next-generation Sequencing (NGS).
    Sorscher S
    Am J Clin Oncol; 2016 Aug; 39(4):424. PubMed ID: 27465427
    [No Abstract]   [Full Text] [Related]  

  • 16. [Role of high-throughput sequencing in oncology].
    Rodrigues MJ; Gomez-Roca C
    Bull Cancer; 2013 Mar; 100(3):295-301. PubMed ID: 23501647
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Evaluation of Nine Somatic Variant Callers for Detection of Somatic Mutations in Exome and Targeted Deep Sequencing Data.
    Krøigård AB; Thomassen M; Lænkholm AV; Kruse TA; Larsen MJ
    PLoS One; 2016; 11(3):e0151664. PubMed ID: 27002637
    [TBL] [Abstract][Full Text] [Related]  

  • 18. A novel framework for analyzing somatic copy number aberrations and tumor subclones for paired heterogeneous tumor samples.
    Xia H; Li A; Yu Z; Liu X; Feng H
    Biomed Mater Eng; 2015; 26 Suppl 1():S1845-53. PubMed ID: 26405956
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Genomic technologies and the new era of genomic medicine.
    Ankala A; Hegde M
    J Mol Diagn; 2014 Jan; 16(1):7-10. PubMed ID: 24269227
    [No Abstract]   [Full Text] [Related]  

  • 20. E2F1 somatic mutation within miRNA target site impairs gene regulation in colorectal cancer.
    Lopes-Ramos CM; Barros BP; Koyama FC; Carpinetti PA; Pezuk J; Doimo NTS; Habr-Gama A; Perez RO; Parmigiani RB
    PLoS One; 2017; 12(7):e0181153. PubMed ID: 28704519
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 9.