596 related articles for article (PubMed ID: 29945198)
1. Toward predictive R-loop computational biology: genome-scale prediction of R-loops reveals their association with complex promoter structures, G-quadruplexes and transcriptionally active enhancers.
Kuznetsov VA; Bondarenko V; Wongsurawat T; Yenamandra SP; Jenjaroenpun P
Nucleic Acids Res; 2018 Sep; 46(15):7566-7585. PubMed ID: 29945198
[TBL] [Abstract][Full Text] [Related]
2. QmRLFS-finder: a model, web server and stand-alone tool for prediction and analysis of R-loop forming sequences.
Jenjaroenpun P; Wongsurawat T; Yenamandra SP; Kuznetsov VA
Nucleic Acids Res; 2015 Jul; 43(W1):W527-34. PubMed ID: 25883153
[TBL] [Abstract][Full Text] [Related]
3. R-loopDB: a database for R-loop forming sequences (RLFS) and R-loops.
Jenjaroenpun P; Wongsurawat T; Sutheeworapong S; Kuznetsov VA
Nucleic Acids Res; 2017 Jan; 45(D1):D119-D127. PubMed ID: 27899586
[TBL] [Abstract][Full Text] [Related]
4. Prevalent, Dynamic, and Conserved R-Loop Structures Associate with Specific Epigenomic Signatures in Mammals.
Sanz LA; Hartono SR; Lim YW; Steyaert S; Rajpurkar A; Ginno PA; Xu X; Chédin F
Mol Cell; 2016 Jul; 63(1):167-78. PubMed ID: 27373332
[TBL] [Abstract][Full Text] [Related]
5. Possible regulatory roles of promoter g-quadruplexes in cardiac function-related genes - human TnIc as a model.
Zhou W; Suntharalingam K; Brand NJ; Barton PJ; Vilar R; Ying L
PLoS One; 2013; 8(1):e53137. PubMed ID: 23326389
[TBL] [Abstract][Full Text] [Related]
6. Quantitative model of R-loop forming structures reveals a novel level of RNA-DNA interactome complexity.
Wongsurawat T; Jenjaroenpun P; Kwoh CK; Kuznetsov V
Nucleic Acids Res; 2012 Jan; 40(2):e16. PubMed ID: 22121227
[TBL] [Abstract][Full Text] [Related]
7. Integrative characterization of G-Quadruplexes in the three-dimensional chromatin structure.
Hou Y; Li F; Zhang R; Li S; Liu H; Qin ZS; Sun X
Epigenetics; 2019 Sep; 14(9):894-911. PubMed ID: 31177910
[TBL] [Abstract][Full Text] [Related]
8. Detection and Characterization of R Loop Structures.
Boque-Sastre R; Soler M; Guil S
Methods Mol Biol; 2017; 1543():231-242. PubMed ID: 28349431
[TBL] [Abstract][Full Text] [Related]
9. G-quadruplexes in promoters throughout the human genome.
Huppert JL; Balasubramanian S
Nucleic Acids Res; 2007; 35(2):406-13. PubMed ID: 17169996
[TBL] [Abstract][Full Text] [Related]
10. Genome-wide computational analysis of potential long noncoding RNA mediated DNA:DNA:RNA triplexes in the human genome.
Jalali S; Singh A; Maiti S; Scaria V
J Transl Med; 2017 Sep; 15(1):186. PubMed ID: 28865451
[TBL] [Abstract][Full Text] [Related]
11. Toward predictive R-loop computational biology: genome-scale prediction of R-loops reveals their association with complex promoter structures, G-quadruplexes and transcriptionally active enhancers.
Kuznetsov VA; Bondarenko V; Wongsurawat T; Yenamandra SP; Jenjaroenpun P
Nucleic Acids Res; 2018 Sep; 46(15):8023. PubMed ID: 30053183
[No Abstract] [Full Text] [Related]
12. G-quadruplex-R-loop interactions and the mechanism of anticancer G-quadruplex binders.
Miglietta G; Russo M; Capranico G
Nucleic Acids Res; 2020 Dec; 48(21):11942-11957. PubMed ID: 33137181
[TBL] [Abstract][Full Text] [Related]
13. Characterization of long G4-rich enhancer-associated genomic regions engaging in a novel loop:loop 'G4 Kissing' interaction.
Williams JD; Houserova D; Johnson BR; Dyniewski B; Berroyer A; French H; Barchie AA; Bilbrey DD; Demeis JD; Ghee KR; Hughes AG; Kreitz NW; McInnis CH; Pudner SC; Reeves MN; Stahly AN; Turcu A; Watters BC; Daly GT; Langley RJ; Gillespie MN; Prakash A; Larson ED; Kasukurthi MV; Huang J; Jinks-Robertson S; Borchert GM
Nucleic Acids Res; 2020 Jun; 48(11):5907-5925. PubMed ID: 32383760
[TBL] [Abstract][Full Text] [Related]
14. Enhancer-promoter interaction facilitated by transiently forming G-quadruplexes.
Hegyi H
Sci Rep; 2015 Mar; 5():9165. PubMed ID: 25772493
[TBL] [Abstract][Full Text] [Related]
15. The long-range interaction landscape of gene promoters.
Sanyal A; Lajoie BR; Jain G; Dekker J
Nature; 2012 Sep; 489(7414):109-13. PubMed ID: 22955621
[TBL] [Abstract][Full Text] [Related]
16. The interplay of RNA:DNA hybrid structure and G-quadruplexes determines the outcome of R-loop-replisome collisions.
Kumar C; Batra S; Griffith JD; Remus D
Elife; 2021 Sep; 10():. PubMed ID: 34494544
[TBL] [Abstract][Full Text] [Related]
17. Human DHX9 helicase preferentially unwinds RNA-containing displacement loops (R-loops) and G-quadruplexes.
Chakraborty P; Grosse F
DNA Repair (Amst); 2011 Jun; 10(6):654-65. PubMed ID: 21561811
[TBL] [Abstract][Full Text] [Related]
18. R-ChIP Using Inactive RNase H Reveals Dynamic Coupling of R-loops with Transcriptional Pausing at Gene Promoters.
Chen L; Chen JY; Zhang X; Gu Y; Xiao R; Shao C; Tang P; Qian H; Luo D; Li H; Zhou Y; Zhang DE; Fu XD
Mol Cell; 2017 Nov; 68(4):745-757.e5. PubMed ID: 29104020
[TBL] [Abstract][Full Text] [Related]
19. G-Quadruplex DNA and RNA.
Yang D
Methods Mol Biol; 2019; 2035():1-24. PubMed ID: 31444741
[TBL] [Abstract][Full Text] [Related]
20. Stable bulged G-quadruplexes in the human genome: identification, experimental validation and functionalization.
Papp C; Mukundan VT; Jenjaroenpun P; Winnerdy FR; Ow GS; Phan AT; Kuznetsov VA
Nucleic Acids Res; 2023 May; 51(9):4148-4177. PubMed ID: 37094040
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]