These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

120 related articles for article (PubMed ID: 29949955)

  • 1. BEL2ABM: agent-based simulation of static models in Biological Expression Language.
    Gündel M; Hoyt CT; Hofmann-Apitius M
    Bioinformatics; 2018 Jul; 34(13):2316-2318. PubMed ID: 29949955
    [TBL] [Abstract][Full Text] [Related]  

  • 2. PyBEL: a computational framework for Biological Expression Language.
    Hoyt CT; Konotopez A; Ebeling C; Wren J
    Bioinformatics; 2018 Feb; 34(4):703-704. PubMed ID: 29048466
    [TBL] [Abstract][Full Text] [Related]  

  • 3. libOmexMeta: enabling semantic annotation of models to support FAIR principles.
    Welsh C; Nickerson DP; Rampadarath A; Neal ML; Sauro HM; Gennari JH
    Bioinformatics; 2021 Dec; 37(24):4898-4900. PubMed ID: 34132740
    [TBL] [Abstract][Full Text] [Related]  

  • 4. YaHS: yet another Hi-C scaffolding tool.
    Zhou C; McCarthy SA; Durbin R
    Bioinformatics; 2023 Jan; 39(1):. PubMed ID: 36525368
    [TBL] [Abstract][Full Text] [Related]  

  • 5. TADOSS: computational estimation of tandem domain swap stability.
    Lafita A; Tian P; Best RB; Bateman A
    Bioinformatics; 2019 Jul; 35(14):2507-2508. PubMed ID: 30500878
    [TBL] [Abstract][Full Text] [Related]  

  • 6. StonPy: a tool to parse and query collections of SBGN maps in a graph database.
    Rougny A; Balaur I; Luna A; Mazein A
    Bioinformatics; 2023 Mar; 39(3):. PubMed ID: 36897014
    [TBL] [Abstract][Full Text] [Related]  

  • 7. ASPRAlign: a tool for the alignment of RNA secondary structures with arbitrary pseudoknots.
    Quadrini M; Tesei L; Merelli E
    Bioinformatics; 2020 Jun; 36(11):3578-3579. PubMed ID: 32125359
    [TBL] [Abstract][Full Text] [Related]  

  • 8. ExpansionHunter: a sequence-graph-based tool to analyze variation in short tandem repeat regions.
    Dolzhenko E; Deshpande V; Schlesinger F; Krusche P; Petrovski R; Chen S; Emig-Agius D; Gross A; Narzisi G; Bowman B; Scheffler K; van Vugt JJFA; French C; Sanchis-Juan A; Ibáñez K; Tucci A; Lajoie BR; Veldink JH; Raymond FL; Taft RJ; Bentley DR; Eberle MA
    Bioinformatics; 2019 Nov; 35(22):4754-4756. PubMed ID: 31134279
    [TBL] [Abstract][Full Text] [Related]  

  • 9. CONSTAX2: improved taxonomic classification of environmental DNA markers.
    Liber JA; Bonito G; Benucci GMN
    Bioinformatics; 2021 Nov; 37(21):3941-3943. PubMed ID: 33961008
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Automated inference of Boolean models from molecular interaction maps using CaSQ.
    Aghamiri SS; Singh V; Naldi A; Helikar T; Soliman S; Niarakis A
    Bioinformatics; 2020 Aug; 36(16):4473-4482. PubMed ID: 32403123
    [TBL] [Abstract][Full Text] [Related]  

  • 11. ICT: isotope correction toolbox.
    Jungreuthmayer C; Neubauer S; Mairinger T; Zanghellini J; Hann S
    Bioinformatics; 2016 Jan; 32(1):154-6. PubMed ID: 26382193
    [TBL] [Abstract][Full Text] [Related]  

  • 12. pyPESTO: a modular and scalable tool for parameter estimation for dynamic models.
    Schälte Y; Fröhlich F; Jost PJ; Vanhoefer J; Pathirana D; Stapor P; Lakrisenko P; Wang D; Raimúndez E; Merkt S; Schmiester L; Städter P; Grein S; Dudkin E; Doresic D; Weindl D; Hasenauer J
    Bioinformatics; 2023 Nov; 39(11):. PubMed ID: 37995297
    [TBL] [Abstract][Full Text] [Related]  

  • 13. INDRA-IPM: interactive pathway modeling using natural language with automated assembly.
    Todorov PV; Gyori BM; Bachman JA; Sorger PK
    Bioinformatics; 2019 Nov; 35(21):4501-4503. PubMed ID: 31070726
    [TBL] [Abstract][Full Text] [Related]  

  • 14. aCLImatise: automated generation of tool definitions for bioinformatics workflows.
    Milton M; Thorne N
    Bioinformatics; 2021 Apr; 36(22-23):5556-5557. PubMed ID: 33325479
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Symbolic kinetic models in python (SKiMpy): intuitive modeling of large-scale biological kinetic models.
    Weilandt DR; Salvy P; Masid M; Fengos G; Denhardt-Erikson R; Hosseini Z; Hatzimanikatis V
    Bioinformatics; 2023 Jan; 39(1):. PubMed ID: 36495209
    [TBL] [Abstract][Full Text] [Related]  

  • 16. BioKEEN: a library for learning and evaluating biological knowledge graph embeddings.
    Ali M; Hoyt CT; Domingo-Fernández D; Lehmann J; Jabeen H
    Bioinformatics; 2019 Sep; 35(18):3538-3540. PubMed ID: 30768158
    [TBL] [Abstract][Full Text] [Related]  

  • 17. MOCCASIN: converting MATLAB ODE models to SBML.
    Gómez HF; Hucka M; Keating SM; Nudelman G; Iber D; Sealfon SC
    Bioinformatics; 2016 Jun; 32(12):1905-6. PubMed ID: 26861819
    [TBL] [Abstract][Full Text] [Related]  

  • 18. SPECTRE: a suite of phylogenetic tools for reticulate evolution.
    Bastkowski S; Mapleson D; Spillner A; Wu T; Balvociute M; Moulton V
    Bioinformatics; 2018 Mar; 34(6):1056-1057. PubMed ID: 29186450
    [TBL] [Abstract][Full Text] [Related]  

  • 19. PySCeSToolbox: a collection of metabolic pathway analysis tools.
    Christensen CD; Hofmeyr JS; Rohwer JM
    Bioinformatics; 2018 Jan; 34(1):124-125. PubMed ID: 28968872
    [TBL] [Abstract][Full Text] [Related]  

  • 20. 3Dscript.server: true server-side 3D animation of microscopy images using a natural language-based syntax.
    Schmid B; Tripal P; Winter Z; Palmisano R
    Bioinformatics; 2021 Dec; 37(24):4901-4902. PubMed ID: 34152405
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 6.