255 related articles for article (PubMed ID: 29949977)
1. An integration of fast alignment and maximum-likelihood methods for electron subtomogram averaging and classification.
Zhao Y; Zeng X; Guo Q; Xu M
Bioinformatics; 2018 Jul; 34(13):i227-i236. PubMed ID: 29949977
[TBL] [Abstract][Full Text] [Related]
2. Autofocused 3D classification of cryoelectron subtomograms.
Chen Y; Pfeffer S; Fernández JJ; Sorzano CO; Förster F
Structure; 2014 Oct; 22(10):1528-37. PubMed ID: 25242455
[TBL] [Abstract][Full Text] [Related]
3. TomoMiner and TomoMinerCloud: A Software Platform for Large-Scale Subtomogram Structural Analysis.
Frazier Z; Xu M; Alber F
Structure; 2017 Jun; 25(6):951-961.e2. PubMed ID: 28552576
[TBL] [Abstract][Full Text] [Related]
4. Deep learning-based subdivision approach for large scale macromolecules structure recovery from electron cryo tomograms.
Xu M; Chai X; Muthakana H; Liang X; Yang G; Zeev-Ben-Mordehai T; Xing EP
Bioinformatics; 2017 Jul; 33(14):i13-i22. PubMed ID: 28881965
[TBL] [Abstract][Full Text] [Related]
5. High-throughput subtomogram alignment and classification by Fourier space constrained fast volumetric matching.
Xu M; Beck M; Alber F
J Struct Biol; 2012 May; 178(2):152-64. PubMed ID: 22420977
[TBL] [Abstract][Full Text] [Related]
6. PyTom: a python-based toolbox for localization of macromolecules in cryo-electron tomograms and subtomogram analysis.
Hrabe T; Chen Y; Pfeffer S; Cuellar LK; Mangold AV; Förster F
J Struct Biol; 2012 May; 178(2):177-88. PubMed ID: 22193517
[TBL] [Abstract][Full Text] [Related]
7. Fast and accurate reference-free alignment of subtomograms.
Chen Y; Pfeffer S; Hrabe T; Schuller JM; Förster F
J Struct Biol; 2013 Jun; 182(3):235-45. PubMed ID: 23523719
[TBL] [Abstract][Full Text] [Related]
8. Automated target segmentation and real space fast alignment methods for high-throughput classification and averaging of crowded cryo-electron subtomograms.
Xu M; Alber F
Bioinformatics; 2013 Jul; 29(13):i274-82. PubMed ID: 23812994
[TBL] [Abstract][Full Text] [Related]
9. Cryo-Electron Tomography and Subtomogram Averaging.
Wan W; Briggs JA
Methods Enzymol; 2016; 579():329-67. PubMed ID: 27572733
[TBL] [Abstract][Full Text] [Related]
10. Assessment of scoring functions to rank the quality of 3D subtomogram clusters from cryo-electron tomography.
Singla J; White KL; Stevens RC; Alber F
J Struct Biol; 2021 Jun; 213(2):107727. PubMed ID: 33753204
[TBL] [Abstract][Full Text] [Related]
11. Few-shot learning for classification of novel macromolecular structures in cryo-electron tomograms.
Li R; Yu L; Zhou B; Zeng X; Wang Z; Yang X; Zhang J; Gao X; Jiang R; Xu M
PLoS Comput Biol; 2020 Nov; 16(11):e1008227. PubMed ID: 33175839
[TBL] [Abstract][Full Text] [Related]
12. Resolving macromolecular structures from electron cryo-tomography data using subtomogram averaging in RELION.
Bharat TA; Scheres SH
Nat Protoc; 2016 Nov; 11(11):2054-65. PubMed ID: 27685097
[TBL] [Abstract][Full Text] [Related]
13. ICON: 3D reconstruction with 'missing-information' restoration in biological electron tomography.
Deng Y; Chen Y; Zhang Y; Wang S; Zhang F; Sun F
J Struct Biol; 2016 Jul; 195(1):100-12. PubMed ID: 27079261
[TBL] [Abstract][Full Text] [Related]
14. High precision alignment of cryo-electron subtomograms through gradient-based parallel optimization.
Xu M; Alber F
BMC Syst Biol; 2012; 6 Suppl 1(Suppl 1):S18. PubMed ID: 23046491
[TBL] [Abstract][Full Text] [Related]
15. Subtomogram averaging from cryo-electron tomograms.
Leigh KE; Navarro PP; Scaramuzza S; Chen W; Zhang Y; Castaño-Díez D; Kudryashev M
Methods Cell Biol; 2019; 152():217-259. PubMed ID: 31326022
[TBL] [Abstract][Full Text] [Related]
16. Fine-grained alignment of cryo-electron subtomograms based on MPI parallel optimization.
Lü Y; Zeng X; Zhao X; Li S; Li H; Gao X; Xu M
BMC Bioinformatics; 2019 Aug; 20(1):443. PubMed ID: 31455212
[TBL] [Abstract][Full Text] [Related]
17. Compressed sensing for electron cryotomography and high-resolution subtomogram averaging of biological specimens.
Böhning J; Bharat TAM; Collins SM
Structure; 2022 Mar; 30(3):408-417.e4. PubMed ID: 35051366
[TBL] [Abstract][Full Text] [Related]
18. TomoFlow: Analysis of Continuous Conformational Variability of Macromolecules in Cryogenic Subtomograms based on 3D Dense Optical Flow.
Harastani M; Eltsov M; Leforestier A; Jonic S
J Mol Biol; 2022 Jan; 434(2):167381. PubMed ID: 34848215
[TBL] [Abstract][Full Text] [Related]
19. Quantifying resolution limiting factors in subtomogram averaged cryo-electron tomography using simulations.
Voortman LM; Vulović M; Maletta M; Voigt A; Franken EM; Simonetti A; Peters PJ; van Vliet LJ; Rieger B
J Struct Biol; 2014 Aug; 187(2):103-111. PubMed ID: 24998892
[TBL] [Abstract][Full Text] [Related]
20. Dynamo Catalogue: Geometrical tools and data management for particle picking in subtomogram averaging of cryo-electron tomograms.
Castaño-Díez D; Kudryashev M; Stahlberg H
J Struct Biol; 2017 Feb; 197(2):135-144. PubMed ID: 27288866
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]