374 related articles for article (PubMed ID: 29955770)
1. Hybrid correction of highly noisy long reads using a variable-order de Bruijn graph.
Morisse P; Lecroq T; Lefebvre A
Bioinformatics; 2018 Dec; 34(24):4213-4222. PubMed ID: 29955770
[TBL] [Abstract][Full Text] [Related]
2. Scalable long read self-correction and assembly polishing with multiple sequence alignment.
Morisse P; Marchet C; Limasset A; Lecroq T; Lefebvre A
Sci Rep; 2021 Jan; 11(1):761. PubMed ID: 33436980
[TBL] [Abstract][Full Text] [Related]
3. CoLoRMap: Correcting Long Reads by Mapping short reads.
Haghshenas E; Hach F; Sahinalp SC; Chauve C
Bioinformatics; 2016 Sep; 32(17):i545-i551. PubMed ID: 27587673
[TBL] [Abstract][Full Text] [Related]
4. Benchmarking of de novo assembly algorithms for Nanopore data reveals optimal performance of OLC approaches.
Cherukuri Y; Janga SC
BMC Genomics; 2016 Aug; 17 Suppl 7(Suppl 7):507. PubMed ID: 27556636
[TBL] [Abstract][Full Text] [Related]
5. Toward perfect reads: self-correction of short reads via mapping on de Bruijn graphs.
Limasset A; Flot JF; Peterlongo P
Bioinformatics; 2020 Mar; 36(5):1374-1381. PubMed ID: 30785192
[TBL] [Abstract][Full Text] [Related]
6. A hybrid and scalable error correction algorithm for indel and substitution errors of long reads.
Das AK; Goswami S; Lee K; Park SJ
BMC Genomics; 2019 Dec; 20(Suppl 11):948. PubMed ID: 31856721
[TBL] [Abstract][Full Text] [Related]
7. Accurate self-correction of errors in long reads using de Bruijn graphs.
Salmela L; Walve R; Rivals E; Ukkonen E
Bioinformatics; 2017 Mar; 33(6):799-806. PubMed ID: 27273673
[TBL] [Abstract][Full Text] [Related]
8. Evaluation of tools for long read RNA-seq splice-aware alignment.
Križanovic K; Echchiki A; Roux J; Šikic M
Bioinformatics; 2018 Mar; 34(5):748-754. PubMed ID: 29069314
[TBL] [Abstract][Full Text] [Related]
9. TALC: Transcript-level Aware Long-read Correction.
Broseus L; Thomas A; Oldfield AJ; Severac D; Dubois E; Ritchie W
Bioinformatics; 2020 Dec; 36(20):5000-5006. PubMed ID: 32910174
[TBL] [Abstract][Full Text] [Related]
10. lordFAST: sensitive and Fast Alignment Search Tool for LOng noisy Read sequencing Data.
Haghshenas E; Sahinalp SC; Hach F
Bioinformatics; 2019 Jan; 35(1):20-27. PubMed ID: 30561550
[TBL] [Abstract][Full Text] [Related]
11. Evaluation of hybrid and non-hybrid methods for de novo assembly of nanopore reads.
Sović I; Križanović K; Skala K; Šikić M
Bioinformatics; 2016 Sep; 32(17):2582-9. PubMed ID: 27162186
[TBL] [Abstract][Full Text] [Related]
12. A spectral algorithm for fast de novo layout of uncorrected long nanopore reads.
Recanati A; Brüls T; d'Aspremont A
Bioinformatics; 2017 Oct; 33(20):3188-3194. PubMed ID: 28605450
[TBL] [Abstract][Full Text] [Related]
13. Unicycler: Resolving bacterial genome assemblies from short and long sequencing reads.
Wick RR; Judd LM; Gorrie CL; Holt KE
PLoS Comput Biol; 2017 Jun; 13(6):e1005595. PubMed ID: 28594827
[TBL] [Abstract][Full Text] [Related]
14. Jabba: hybrid error correction for long sequencing reads.
Miclotte G; Heydari M; Demeester P; Rombauts S; Van de Peer Y; Audenaert P; Fostier J
Algorithms Mol Biol; 2016; 11():10. PubMed ID: 27148393
[TBL] [Abstract][Full Text] [Related]
15. Illumina error correction near highly repetitive DNA regions improves de novo genome assembly.
Heydari M; Miclotte G; Van de Peer Y; Fostier J
BMC Bioinformatics; 2019 Jun; 20(1):298. PubMed ID: 31159722
[TBL] [Abstract][Full Text] [Related]
16. LRCstats, a tool for evaluating long reads correction methods.
La S; Haghshenas E; Chauve C
Bioinformatics; 2017 Nov; 33(22):3652-3654. PubMed ID: 29036421
[TBL] [Abstract][Full Text] [Related]
17. Genome assembly using Nanopore-guided long and error-free DNA reads.
Madoui MA; Engelen S; Cruaud C; Belser C; Bertrand L; Alberti A; Lemainque A; Wincker P; Aury JM
BMC Genomics; 2015 Apr; 16(1):327. PubMed ID: 25927464
[TBL] [Abstract][Full Text] [Related]
18. Overlap detection on long, error-prone sequencing reads via smooth q-gram.
Song Y; Tang H; Zhang H; Zhang Q
Bioinformatics; 2020 Dec; 36(19):4838-4845. PubMed ID: 32311007
[TBL] [Abstract][Full Text] [Related]
19. QAlign: aligning nanopore reads accurately using current-level modeling.
Joshi D; Mao S; Kannan S; Diggavi S
Bioinformatics; 2021 May; 37(5):625-633. PubMed ID: 33051648
[TBL] [Abstract][Full Text] [Related]
20. deBGA: read alignment with de Bruijn graph-based seed and extension.
Liu B; Guo H; Brudno M; Wang Y
Bioinformatics; 2016 Nov; 32(21):3224-3232. PubMed ID: 27378303
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
