196 related articles for article (PubMed ID: 29981337)
1. A Network Hierarchy-Based method for functional module detection in protein-protein interaction networks.
Liu W; Ma L; Jeon B; Chen L; Chen B
J Theor Biol; 2018 Oct; 455():26-38. PubMed ID: 29981337
[TBL] [Abstract][Full Text] [Related]
2. ACC-FMD: ant colony clustering for functional module detection in protein-protein interaction networks.
Ji J; Liu H; Zhang A; Liu Z; Liu C
Int J Data Min Bioinform; 2015; 11(3):331-63. PubMed ID: 26333266
[TBL] [Abstract][Full Text] [Related]
3. Detecting Functional Modules Based on a Multiple-Grain Model in Large-Scale Protein-Protein Interaction Networks.
Ji J; Lv J; Yang C; Zhang A
IEEE/ACM Trans Comput Biol Bioinform; 2016; 13(4):610-22. PubMed ID: 26394434
[TBL] [Abstract][Full Text] [Related]
4. Identifying protein complexes and functional modules--from static PPI networks to dynamic PPI networks.
Chen B; Fan W; Liu J; Wu FX
Brief Bioinform; 2014 Mar; 15(2):177-94. PubMed ID: 23780996
[TBL] [Abstract][Full Text] [Related]
5. Functional module identification in protein interaction networks by interaction patterns.
Wang Y; Qian X
Bioinformatics; 2014 Jan; 30(1):81-93. PubMed ID: 24085567
[TBL] [Abstract][Full Text] [Related]
6. AdaPPI: identification of novel protein functional modules via adaptive graph convolution networks in a protein-protein interaction network.
Chen H; Cai Y; Ji C; Selvaraj G; Wei D; Wu H
Brief Bioinform; 2023 Jan; 24(1):. PubMed ID: 36526282
[TBL] [Abstract][Full Text] [Related]
7. Towards the identification of protein complexes and functional modules by integrating PPI network and gene expression data.
Li M; Wu X; Wang J; Pan Y
BMC Bioinformatics; 2012 May; 13():109. PubMed ID: 22621308
[TBL] [Abstract][Full Text] [Related]
8. Overlapping functional modules detection in PPI network with pair-wise constrained non-negative matrix tri-factorisation.
Liu G; Chai B; Yang K; Yu J; Zhou X
IET Syst Biol; 2018 Apr; 12(2):45-54. PubMed ID: 29533217
[TBL] [Abstract][Full Text] [Related]
9. SNFM: A semi-supervised NMF algorithm for detecting biological functional modules.
Man YT; Liu GM; Yang K; Zhou XZ
Math Biosci Eng; 2019 Mar; 16(4):1933-1948. PubMed ID: 31137193
[TBL] [Abstract][Full Text] [Related]
10. Identification of protein complexes and functional modules in E. coli PPI networks.
Kong P; Huang G; Liu W
BMC Microbiol; 2020 Aug; 20(1):243. PubMed ID: 32762711
[TBL] [Abstract][Full Text] [Related]
11. A multi-network clustering method for detecting protein complexes from multiple heterogeneous networks.
Ou-Yang L; Yan H; Zhang XF
BMC Bioinformatics; 2017 Dec; 18(Suppl 13):463. PubMed ID: 29219066
[TBL] [Abstract][Full Text] [Related]
12. MOfinder: a novel algorithm for detecting overlapping modules from protein-protein interaction network.
Yu Q; Li GH; Huang JF
J Biomed Biotechnol; 2012; 2012():103702. PubMed ID: 22500072
[TBL] [Abstract][Full Text] [Related]
13. Efficient and accurate Greedy Search Methods for mining functional modules in protein interaction networks.
He J; Li C; Ye B; Zhong W
BMC Bioinformatics; 2012 Jun; 13 Suppl 10(Suppl 10):S19. PubMed ID: 22759424
[TBL] [Abstract][Full Text] [Related]
14. MOEPGA: A novel method to detect protein complexes in yeast protein-protein interaction networks based on MultiObjective Evolutionary Programming Genetic Algorithm.
Cao B; Luo J; Liang C; Wang S; Song D
Comput Biol Chem; 2015 Oct; 58():173-81. PubMed ID: 26298638
[TBL] [Abstract][Full Text] [Related]
15. Protein functional module identification method combining topological features and gene expression data.
Zhao Z; Xu W; Chen A; Han Y; Xia S; Xiang C; Wang C; Jiao J; Wang H; Yuan X; Gu L
BMC Genomics; 2021 Jun; 22(1):423. PubMed ID: 34103008
[TBL] [Abstract][Full Text] [Related]
16. A degree-distribution based hierarchical agglomerative clustering algorithm for protein complexes identification.
Yu L; Gao L; Li K; Zhao Y; Chiu DK
Comput Biol Chem; 2011 Oct; 35(5):298-307. PubMed ID: 22000801
[TBL] [Abstract][Full Text] [Related]
17. NCMine: Core-peripheral based functional module detection using near-clique mining.
Tadaka S; Kinoshita K
Bioinformatics; 2016 Nov; 32(22):3454-3460. PubMed ID: 27466623
[TBL] [Abstract][Full Text] [Related]
18. A novel subgradient-based optimization algorithm for blockmodel functional module identification.
Wang Y; Qian X
BMC Bioinformatics; 2013; 14 Suppl 2(Suppl 2):S23. PubMed ID: 23368964
[TBL] [Abstract][Full Text] [Related]
19. SiPAN: simultaneous prediction and alignment of protein-protein interaction networks.
Alkan F; Erten C
Bioinformatics; 2015 Jul; 31(14):2356-63. PubMed ID: 25788620
[TBL] [Abstract][Full Text] [Related]
20. MTGO: PPI Network Analysis Via Topological and Functional Module Identification.
Vella D; Marini S; Vitali F; Di Silvestre D; Mauri G; Bellazzi R
Sci Rep; 2018 Apr; 8(1):5499. PubMed ID: 29615773
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
