193 related articles for article (PubMed ID: 29982167)
1. Coloured Hybrid Petri Nets: An adaptable modelling approach for multi-scale biological networks.
Herajy M; Liu F; Rohr C; Heiner M
Comput Biol Chem; 2018 Oct; 76():87-100. PubMed ID: 29982167
[TBL] [Abstract][Full Text] [Related]
2. Modelling and simulating reaction-diffusion systems using coloured Petri nets.
Liu F; Blätke MA; Heiner M; Yang M
Comput Biol Med; 2014 Oct; 53():297-308. PubMed ID: 25150626
[TBL] [Abstract][Full Text] [Related]
3. Coloured fuzzy Petri nets for modelling and analysing membrane systems.
Assaf G; Heiner M; Liu F
Biosystems; 2022 Feb; 212():104592. PubMed ID: 34995696
[TBL] [Abstract][Full Text] [Related]
4. Spatial quorum sensing modelling using coloured hybrid Petri nets and simulative model checking.
Gilbert D; Heiner M; Ghanbar L; Chodak J
BMC Bioinformatics; 2019 Apr; 20(Suppl 4):173. PubMed ID: 30999841
[TBL] [Abstract][Full Text] [Related]
5. Constructing biological pathway models with hybrid functional petri nets.
Doi A; Fujita S; Matsuno H; Nagasaki M; Miyano S
Stud Health Technol Inform; 2011; 162():92-112. PubMed ID: 21685566
[TBL] [Abstract][Full Text] [Related]
6. Snoopy's hybrid simulator: a tool to construct and simulate hybrid biological models.
Herajy M; Liu F; Rohr C; Heiner M
BMC Syst Biol; 2017 Jul; 11(1):71. PubMed ID: 28754122
[TBL] [Abstract][Full Text] [Related]
7. Multiscale modelling of coupled Ca2+ channels using coloured stochastic Petri nets.
Liu F; Heiner M
IET Syst Biol; 2013 Aug; 7(4):106-13. PubMed ID: 23919953
[TBL] [Abstract][Full Text] [Related]
8. Towards abstraction of computational modelling of mammalian cell cycle: Model reduction pipeline incorporating multi-level hybrid petri nets.
Abroudi A; Samarasinghe S; Kulasiri D
J Theor Biol; 2020 Jul; 496():110212. PubMed ID: 32142804
[TBL] [Abstract][Full Text] [Related]
9. Modeling and simulation of molecular biology systems using petri nets: modeling goals of various approaches.
Hardy S; Robillard PN
J Bioinform Comput Biol; 2004 Dec; 2(4):595-613. PubMed ID: 15617157
[TBL] [Abstract][Full Text] [Related]
10. Coloured Petri nets for multilevel, multiscale and multidimensional modelling of biological systems.
Liu F; Heiner M; Gilbert D
Brief Bioinform; 2019 May; 20(3):877-886. PubMed ID: 29112705
[TBL] [Abstract][Full Text] [Related]
11. A systematic petri net approach for multiple-scale modeling and simulation of biochemical processes.
Chen M; Hu M; Hofestädt R
Appl Biochem Biotechnol; 2011 Jun; 164(3):338-52. PubMed ID: 21136204
[TBL] [Abstract][Full Text] [Related]
12. Hybrid modeling in biochemical systems theory by means of functional petri nets.
Wu J; Voit E
J Bioinform Comput Biol; 2009 Feb; 7(1):107-34. PubMed ID: 19226663
[TBL] [Abstract][Full Text] [Related]
13. VANESA: An open-source hybrid functional Petri net modeling and simulation environment in systems biology.
Brinkrolf C; Ochel L; Hofestädt R
Biosystems; 2021 Dec; 210():104531. PubMed ID: 34492317
[TBL] [Abstract][Full Text] [Related]
14. Algebraic properties of automata associated to Petri nets and applications to computation in biological systems.
Egri-Nagy A; Nehaniv CL
Biosystems; 2008; 94(1-2):135-44. PubMed ID: 18611428
[TBL] [Abstract][Full Text] [Related]
15. An advanced environment for hybrid modeling of biological systems based on modelica.
Pross S; Bachmann B
J Integr Bioinform; 2011 Jan; 8(1):. PubMed ID: 21248370
[TBL] [Abstract][Full Text] [Related]
16. Hybrid Petri net representation of gene regulatory network.
Matsuno H; Doi A; Nagasaki M; Miyano S
Pac Symp Biocomput; 2000; ():341-52. PubMed ID: 10902182
[TBL] [Abstract][Full Text] [Related]
17. Constructing biological pathway models with hybrid functional Petri nets.
Doi A; Fujita S; Matsuno H; Nagasaki M; Miyano S
In Silico Biol; 2004; 4(3):271-91. PubMed ID: 15724280
[TBL] [Abstract][Full Text] [Related]
18. Comparison of modelling approaches demonstrated for p16-mediated signalling pathway in higher eukaryotes.
Akçay Nİ; Bashirov R
Biosystems; 2021 Dec; 210():104562. PubMed ID: 34662677
[TBL] [Abstract][Full Text] [Related]
19. Two theoretical and practical aspects of knitting technique: invariants and a new class of Petri net.
Chao DY; Wang DT
IEEE Trans Syst Man Cybern B Cybern; 1997; 27(6):962-77. PubMed ID: 18263104
[TBL] [Abstract][Full Text] [Related]
20. Fuzzy Stochastic Petri Nets for Modeling Biological Systems with Uncertain Kinetic Parameters.
Liu F; Heiner M; Yang M
PLoS One; 2016; 11(2):e0149674. PubMed ID: 26910830
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]