316 related articles for article (PubMed ID: 29985608)
1. Predicting Cotranscriptional Folding Kinetics For Riboswitch.
Sun TT; Zhao C; Chen SJ
J Phys Chem B; 2018 Aug; 122(30):7484-7496. PubMed ID: 29985608
[TBL] [Abstract][Full Text] [Related]
2. The regulation mechanism of yitJ and metF riboswitches.
Gong S; Wang Y; Zhang W
J Chem Phys; 2015 Jul; 143(4):045103. PubMed ID: 26233166
[TBL] [Abstract][Full Text] [Related]
3. Single-molecule FRET studies on the cotranscriptional folding of a thiamine pyrophosphate riboswitch.
Uhm H; Kang W; Ha KS; Kang C; Hohng S
Proc Natl Acad Sci U S A; 2018 Jan; 115(2):331-336. PubMed ID: 29279370
[TBL] [Abstract][Full Text] [Related]
4. Cotranscriptional folding of a riboswitch at nucleotide resolution.
Watters KE; Strobel EJ; Yu AM; Lis JT; Lucks JB
Nat Struct Mol Biol; 2016 Dec; 23(12):1124-1131. PubMed ID: 27798597
[TBL] [Abstract][Full Text] [Related]
5. Using simulations and kinetic network models to reveal the dynamics and functions of riboswitches.
Lin JC; Yoon J; Hyeon C; Thirumalai D
Methods Enzymol; 2015; 553():235-58. PubMed ID: 25726468
[TBL] [Abstract][Full Text] [Related]
6. The dynamic nature of RNA as key to understanding riboswitch mechanisms.
Haller A; Soulière MF; Micura R
Acc Chem Res; 2011 Dec; 44(12):1339-48. PubMed ID: 21678902
[TBL] [Abstract][Full Text] [Related]
7. Single-molecule force spectroscopy of the add adenine riboswitch relates folding to regulatory mechanism.
Neupane K; Yu H; Foster DA; Wang F; Woodside MT
Nucleic Acids Res; 2011 Sep; 39(17):7677-87. PubMed ID: 21653559
[TBL] [Abstract][Full Text] [Related]
8. Direct observation of cotranscriptional folding in an adenine riboswitch.
Frieda KL; Block SM
Science; 2012 Oct; 338(6105):397-400. PubMed ID: 23087247
[TBL] [Abstract][Full Text] [Related]
9. Sequence-dependent folding landscapes of adenine riboswitch aptamers.
Lin JC; Hyeon C; Thirumalai D
Phys Chem Chem Phys; 2014 Apr; 16(14):6376-82. PubMed ID: 24366448
[TBL] [Abstract][Full Text] [Related]
10. Direct observation of hierarchical folding in single riboswitch aptamers.
Greenleaf WJ; Frieda KL; Foster DA; Woodside MT; Block SM
Science; 2008 Feb; 319(5863):630-3. PubMed ID: 18174398
[TBL] [Abstract][Full Text] [Related]
11. Cotranscriptional RNA strand exchange underlies the gene regulation mechanism in a purine-sensing transcriptional riboswitch.
Cheng L; White EN; Brandt NL; Yu AM; Chen AA; Lucks JB
Nucleic Acids Res; 2022 Nov; 50(21):12001-12018. PubMed ID: 35348734
[TBL] [Abstract][Full Text] [Related]
12. Landscape Zooming toward the Prediction of RNA Cotranscriptional Folding.
Xu X; Jin L; Xie L; Chen SJ
J Chem Theory Comput; 2022 Mar; 18(3):2002-2015. PubMed ID: 35133833
[TBL] [Abstract][Full Text] [Related]
13. Transcriptional pausing coordinates folding of the aptamer domain and the expression platform of a riboswitch.
Perdrizet GA; Artsimovitch I; Furman R; Sosnick TR; Pan T
Proc Natl Acad Sci U S A; 2012 Feb; 109(9):3323-8. PubMed ID: 22331895
[TBL] [Abstract][Full Text] [Related]
14. Relative stability of helices determines the folding landscape of adenine riboswitch aptamers.
Lin JC; Thirumalai D
J Am Chem Soc; 2008 Oct; 130(43):14080-1. PubMed ID: 18828635
[TBL] [Abstract][Full Text] [Related]
15. A ligand-gated strand displacement mechanism for ZTP riboswitch transcription control.
Strobel EJ; Cheng L; Berman KE; Carlson PD; Lucks JB
Nat Chem Biol; 2019 Nov; 15(11):1067-1076. PubMed ID: 31636437
[TBL] [Abstract][Full Text] [Related]
16. Requirements for efficient ligand-gated co-transcriptional switching in designed variants of the B. subtilis pbuE adenine-responsive riboswitch in E. coli.
Drogalis LK; Batey RT
PLoS One; 2020; 15(12):e0243155. PubMed ID: 33259551
[TBL] [Abstract][Full Text] [Related]
17. Linking aptamer-ligand binding and expression platform folding in riboswitches: prospects for mechanistic modeling and design.
Aboul-ela F; Huang W; Abd Elrahman M; Boyapati V; Li P
Wiley Interdiscip Rev RNA; 2015; 6(6):631-50. PubMed ID: 26361734
[TBL] [Abstract][Full Text] [Related]
18. The importance of helix P1 stability for structural pre-organization and ligand binding affinity of the adenine riboswitch aptamer domain.
Nozinovic S; Reining A; Kim YB; Noeske J; Schlepckow K; Wöhnert J; Schwalbe H
RNA Biol; 2014; 11(5):655-6. PubMed ID: 24921630
[TBL] [Abstract][Full Text] [Related]
19. A structural intermediate pre-organizes the add adenine riboswitch for ligand recognition.
St-Pierre P; Shaw E; Jacques S; Dalgarno PA; Perez-Gonzalez C; Picard-Jean F; Penedo JC; Lafontaine DA
Nucleic Acids Res; 2021 Jun; 49(10):5891-5904. PubMed ID: 33963862
[TBL] [Abstract][Full Text] [Related]
20. Computational Methods for Modeling Aptamers and Designing Riboswitches.
Gong S; Wang Y; Wang Z; Zhang W
Int J Mol Sci; 2017 Nov; 18(11):. PubMed ID: 29149090
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]