These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.
176 related articles for article (PubMed ID: 29990004)
1. Protein Remote Homology Detection and Fold Recognition Based on Sequence-Order Frequency Matrix. Liu B; Chen J; Guo M; Wang X IEEE/ACM Trans Comput Biol Bioinform; 2019; 16(1):292-300. PubMed ID: 29990004 [TBL] [Abstract][Full Text] [Related]
2. Probabilistic multi-class multi-kernel learning: on protein fold recognition and remote homology detection. Damoulas T; Girolami MA Bioinformatics; 2008 May; 24(10):1264-70. PubMed ID: 18378524 [TBL] [Abstract][Full Text] [Related]
3. Advancing the Accuracy of Protein Fold Recognition by Utilizing Profiles From Hidden Markov Models. Lyons J; Dehzangi A; Heffernan R; Yang Y; Zhou Y; Sharma A; Paliwal K IEEE Trans Nanobioscience; 2015 Oct; 14(7):761-72. PubMed ID: 26208362 [TBL] [Abstract][Full Text] [Related]
4. Profile-based direct kernels for remote homology detection and fold recognition. Rangwala H; Karypis G Bioinformatics; 2005 Dec; 21(23):4239-47. PubMed ID: 16188929 [TBL] [Abstract][Full Text] [Related]
5. SVM-Fold: a tool for discriminative multi-class protein fold and superfamily recognition. Melvin I; Ie E; Kuang R; Weston J; Stafford WN; Leslie C BMC Bioinformatics; 2007 May; 8 Suppl 4(Suppl 4):S2. PubMed ID: 17570145 [TBL] [Abstract][Full Text] [Related]
6. A discriminative method for protein remote homology detection and fold recognition combining Top-n-grams and latent semantic analysis. Liu B; Wang X; Lin L; Dong Q; Wang X BMC Bioinformatics; 2008 Dec; 9():510. PubMed ID: 19046430 [TBL] [Abstract][Full Text] [Related]
7. ProtDet-CCH: Protein Remote Homology Detection by Combining Long Short-Term Memory and Ranking Methods. Liu B; Li S IEEE/ACM Trans Comput Biol Bioinform; 2019; 16(4):1203-1210. PubMed ID: 29993950 [TBL] [Abstract][Full Text] [Related]
8. Protein remote homology detection based on auto-cross covariance transformation. Liu X; Zhao L; Dong Q Comput Biol Med; 2011 Aug; 41(8):640-7. PubMed ID: 21664609 [TBL] [Abstract][Full Text] [Related]
9. Application of nonnegative matrix factorization to improve profile-profile alignment features for fold recognition and remote homolog detection. Jung I; Lee J; Lee SY; Kim D BMC Bioinformatics; 2008 Jul; 9():298. PubMed ID: 18590572 [TBL] [Abstract][Full Text] [Related]
10. Optimizing amino acid substitution matrices with a local alignment kernel. Saigo H; Vert JP; Akutsu T BMC Bioinformatics; 2006 May; 7():246. PubMed ID: 16677385 [TBL] [Abstract][Full Text] [Related]
11. Profile-based string kernels for remote homology detection and motif extraction. Kuang R; Ie E; Wang K; Wang K; Siddiqi M; Freund Y; Leslie C J Bioinform Comput Biol; 2005 Jun; 3(3):527-50. PubMed ID: 16108083 [TBL] [Abstract][Full Text] [Related]
12. Support vector machines with profile-based kernels for remote protein homology detection. Busuttil S; Abela J; Pace GJ Genome Inform; 2004; 15(2):191-200. PubMed ID: 15706505 [TBL] [Abstract][Full Text] [Related]
13. MRFalign: protein homology detection through alignment of Markov random fields. Ma J; Wang S; Wang Z; Xu J PLoS Comput Biol; 2014 Mar; 10(3):e1003500. PubMed ID: 24675572 [TBL] [Abstract][Full Text] [Related]
14. Filling-in void and sparse regions in protein sequence space by protein-like artificial sequences enables remarkable enhancement in remote homology detection capability. Mudgal R; Sowdhamini R; Chandra N; Srinivasan N; Sandhya S J Mol Biol; 2014 Feb; 426(4):962-79. PubMed ID: 24316367 [TBL] [Abstract][Full Text] [Related]
16. ReFold-MAP: Protein remote homology detection and fold recognition based on features extracted from profiles. Guo Y; Yan K; Wu H; Liu B Anal Biochem; 2020 Dec; 611():114013. PubMed ID: 33160906 [TBL] [Abstract][Full Text] [Related]
17. Application of latent semantic analysis to protein remote homology detection. Dong QW; Wang XL; Lin L Bioinformatics; 2006 Feb; 22(3):285-90. PubMed ID: 16317074 [TBL] [Abstract][Full Text] [Related]
18. Protein fold recognition by alignment of amino acid residues using kernelized dynamic time warping. Lyons J; Biswas N; Sharma A; Dehzangi A; Paliwal KK J Theor Biol; 2014 Aug; 354():137-45. PubMed ID: 24698944 [TBL] [Abstract][Full Text] [Related]
19. Remote homology detection: a motif based approach. Ben-Hur A; Brutlag D Bioinformatics; 2003; 19 Suppl 1():i26-33. PubMed ID: 12855434 [TBL] [Abstract][Full Text] [Related]
20. Significant speedup of database searches with HMMs by search space reduction with PSSM family models. Beckstette M; Homann R; Giegerich R; Kurtz S Bioinformatics; 2009 Dec; 25(24):3251-8. PubMed ID: 19828575 [TBL] [Abstract][Full Text] [Related] [Next] [New Search]