These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

112 related articles for article (PubMed ID: 29990287)

  • 21. Complete generic-level phylogenetic analyses of palms (Arecaceae) with comparisons of supertree and supermatrix approaches.
    Baker WJ; Savolainen V; Asmussen-Lange CB; Chase MW; Dransfield J; Forest F; Harley MM; Uhl NW; Wilkinson M
    Syst Biol; 2009 Apr; 58(2):240-56. PubMed ID: 20525581
    [TBL] [Abstract][Full Text] [Related]  

  • 22. Invariant transformers of Robinson and Foulds distance matrices for Convolutional Neural Network.
    Tahiri N; Veriga A; Koshkarov A; Morozov B
    J Bioinform Comput Biol; 2022 Aug; 20(4):2250012. PubMed ID: 35798684
    [TBL] [Abstract][Full Text] [Related]  

  • 23. Bayesian gene/species tree reconciliation and orthology analysis using MCMC.
    Arvestad L; Berglund AC; Lagergren J; Sennblad B
    Bioinformatics; 2003; 19 Suppl 1():i7-15. PubMed ID: 12855432
    [TBL] [Abstract][Full Text] [Related]  

  • 24. Inferring duplication episodes from unrooted gene trees.
    Paszek J; Górecki P
    BMC Genomics; 2018 May; 19(Suppl 5):288. PubMed ID: 29745844
    [TBL] [Abstract][Full Text] [Related]  

  • 25. MetaPhOrs: orthology and paralogy predictions from multiple phylogenetic evidence using a consistency-based confidence score.
    Pryszcz LP; Huerta-Cepas J; Gabaldón T
    Nucleic Acids Res; 2011 Mar; 39(5):e32. PubMed ID: 21149260
    [TBL] [Abstract][Full Text] [Related]  

  • 26. Inferring orthology and paralogy.
    Altenhoff AM; Dessimoz C
    Methods Mol Biol; 2012; 855():259-79. PubMed ID: 22407712
    [TBL] [Abstract][Full Text] [Related]  

  • 27. Automated ortholog inference from phylogenetic trees and calculation of orthology reliability.
    Storm CE; Sonnhammer EL
    Bioinformatics; 2002 Jan; 18(1):92-9. PubMed ID: 11836216
    [TBL] [Abstract][Full Text] [Related]  

  • 28. Tree pattern matching in phylogenetic trees: automatic search for orthologs or paralogs in homologous gene sequence databases.
    Dufayard JF; Duret L; Penel S; Gouy M; Rechenmann F; Perrière G
    Bioinformatics; 2005 Jun; 21(11):2596-603. PubMed ID: 15713731
    [TBL] [Abstract][Full Text] [Related]  

  • 29. Reconciling gene and genome duplication events: using multiple nuclear gene families to infer the phylogeny of the aquatic plant family Pontederiaceae.
    Ness RW; Graham SW; Barrett SC
    Mol Biol Evol; 2011 Nov; 28(11):3009-18. PubMed ID: 21633114
    [TBL] [Abstract][Full Text] [Related]  

  • 30. Optimal gene trees from sequences and species trees using a soft interpretation of parsimony.
    Berglund-Sonnhammer AC; Steffansson P; Betts MJ; Liberles DA
    J Mol Evol; 2006 Aug; 63(2):240-50. PubMed ID: 16830091
    [TBL] [Abstract][Full Text] [Related]  

  • 31. Reconciliation with non-binary species trees.
    Vernot B; Stolzer M; Goldman A; Durand D
    J Comput Biol; 2008 Oct; 15(8):981-1006. PubMed ID: 18808330
    [TBL] [Abstract][Full Text] [Related]  

  • 32. Inferring phylogeny from whole genomes.
    Górecki P; Tiuryn J
    Bioinformatics; 2007 Jan; 23(2):e116-22. PubMed ID: 17237078
    [TBL] [Abstract][Full Text] [Related]  

  • 33. Reconstructing protein and gene phylogenies using reconciliation and soft-clustering.
    Kuitche E; Lafond M; Ouangraoua A
    J Bioinform Comput Biol; 2017 Dec; 15(6):1740007. PubMed ID: 29169277
    [TBL] [Abstract][Full Text] [Related]  

  • 34. Rooting Species Trees Using Gene Tree-Species Tree Reconciliation.
    Harris BJ; Sheridan PO; Davín AA; Gubry-Rangin C; Szöllősi GJ; Williams TA
    Methods Mol Biol; 2022; 2569():189-211. PubMed ID: 36083449
    [TBL] [Abstract][Full Text] [Related]  

  • 35. The serine repeat antigen (SERA) gene family phylogeny in Plasmodium: the impact of GC content and reconciliation of gene and species trees.
    Bourgon R; Delorenzi M; Sargeant T; Hodder AN; Crabb BS; Speed TP
    Mol Biol Evol; 2004 Nov; 21(11):2161-71. PubMed ID: 15306658
    [TBL] [Abstract][Full Text] [Related]  

  • 36. ASTRAL-Pro: Quartet-Based Species-Tree Inference despite Paralogy.
    Zhang C; Scornavacca C; Molloy EK; Mirarab S
    Mol Biol Evol; 2020 Nov; 37(11):3292-3307. PubMed ID: 32886770
    [TBL] [Abstract][Full Text] [Related]  

  • 37. Phylogenetic identification of lateral genetic transfer events.
    Beiko RG; Hamilton N
    BMC Evol Biol; 2006 Feb; 6():15. PubMed ID: 16472400
    [TBL] [Abstract][Full Text] [Related]  

  • 38. Bias in phylogenetic tree reconciliation methods: implications for vertebrate genome evolution.
    Hahn MW
    Genome Biol; 2007; 8(7):R141. PubMed ID: 17634151
    [TBL] [Abstract][Full Text] [Related]  

  • 39. The Unconstrained Diameters of the Duplication-Loss Cost and the Loss Cost.
    Gorecki P; Eulenstein O; Tiuryn J
    IEEE/ACM Trans Comput Biol Bioinform; 2021; 18(6):2125-2135. PubMed ID: 31150345
    [TBL] [Abstract][Full Text] [Related]  

  • 40. A Linear Time Solution to the Labeled Robinson-Foulds Distance Problem.
    Briand S; Dessimoz C; El-Mabrouk N; Nevers Y
    Syst Biol; 2022 Oct; 71(6):1391-1403. PubMed ID: 35426933
    [TBL] [Abstract][Full Text] [Related]  

    [Previous]   [Next]    [New Search]
    of 6.