BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

315 related articles for article (PubMed ID: 29991676)

  • 1. Detection and removal of barcode swapping in single-cell RNA-seq data.
    Griffiths JA; Richard AC; Bach K; Lun ATL; Marioni JC
    Nat Commun; 2018 Jul; 9(1):2667. PubMed ID: 29991676
    [TBL] [Abstract][Full Text] [Related]  

  • 2. The effect of background noise and its removal on the analysis of single-cell expression data.
    Janssen P; Kliesmete Z; Vieth B; Adiconis X; Simmons S; Marshall J; McCabe C; Heyn H; Levin JZ; Enard W; Hellmann I
    Genome Biol; 2023 Jun; 24(1):140. PubMed ID: 37337297
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Comparative Analysis of Droplet-Based Ultra-High-Throughput Single-Cell RNA-Seq Systems.
    Zhang X; Li T; Liu F; Chen Y; Yao J; Li Z; Huang Y; Wang J
    Mol Cell; 2019 Jan; 73(1):130-142.e5. PubMed ID: 30472192
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Sequencing: 10X Genomics 3' HT Assay for Gene Expression.
    Orzolek LD
    Methods Mol Biol; 2024; 2822():207-226. PubMed ID: 38907921
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Exploiting antigen receptor information to quantify index switching in single-cell transcriptome sequencing experiments.
    Yao Y; Zia A; Wyrożemski Ł; Lindeman I; Sandve GK; Qiao SW
    PLoS One; 2018; 13(12):e0208484. PubMed ID: 30517183
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Inference and effects of barcode multiplets in droplet-based single-cell assays.
    Lareau CA; Ma S; Duarte FM; Buenrostro JD
    Nat Commun; 2020 Feb; 11(1):866. PubMed ID: 32054859
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Characterization and remediation of sample index swaps by non-redundant dual indexing on massively parallel sequencing platforms.
    Costello M; Fleharty M; Abreu J; Farjoun Y; Ferriera S; Holmes L; Granger B; Green L; Howd T; Mason T; Vicente G; Dasilva M; Brodeur W; DeSmet T; Dodge S; Lennon NJ; Gabriel S
    BMC Genomics; 2018 May; 19(1):332. PubMed ID: 29739332
    [TBL] [Abstract][Full Text] [Related]  

  • 8. scruff: an R/Bioconductor package for preprocessing single-cell RNA-sequencing data.
    Wang Z; Hu J; Johnson WE; Campbell JD
    BMC Bioinformatics; 2019 May; 20(1):222. PubMed ID: 31046658
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Microfluidic single-cell whole-transcriptome sequencing.
    Streets AM; Zhang X; Cao C; Pang Y; Wu X; Xiong L; Yang L; Fu Y; Zhao L; Tang F; Huang Y
    Proc Natl Acad Sci U S A; 2014 May; 111(19):7048-53. PubMed ID: 24782542
    [TBL] [Abstract][Full Text] [Related]  

  • 10. dropEst: pipeline for accurate estimation of molecular counts in droplet-based single-cell RNA-seq experiments.
    Petukhov V; Guo J; Baryawno N; Severe N; Scadden DT; Samsonova MG; Kharchenko PV
    Genome Biol; 2018 Jun; 19(1):78. PubMed ID: 29921301
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Unambiguous detection of SARS-CoV-2 subgenomic mRNAs with single-cell RNA sequencing.
    Cohen P; DeGrace EJ; Danziger O; Patel RS; Barrall EA; Bobrowski T; Kehrer T; Cupic A; Miorin L; García-Sastre A; Rosenberg BR
    Microbiol Spectr; 2023 Sep; 11(5):e0077623. PubMed ID: 37676044
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Barcode identification for single cell genomics.
    Tambe A; Pachter L
    BMC Bioinformatics; 2019 Jan; 20(1):32. PubMed ID: 30654736
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Separation and parallel sequencing of the genomes and transcriptomes of single cells using G&T-seq.
    Macaulay IC; Teng MJ; Haerty W; Kumar P; Ponting CP; Voet T
    Nat Protoc; 2016 Nov; 11(11):2081-103. PubMed ID: 27685099
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Direct Comparative Analyses of 10X Genomics Chromium and Smart-seq2.
    Wang X; He Y; Zhang Q; Ren X; Zhang Z
    Genomics Proteomics Bioinformatics; 2021 Apr; 19(2):253-266. PubMed ID: 33662621
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Chromium 10× Single-Cell 3' mRNA Sequencing of Tumor-Infiltrating Lymphocytes.
    De Simone M; Rossetti G; Pagani M
    Methods Mol Biol; 2019; 1979():87-110. PubMed ID: 31028634
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Single-Cell Transcriptomics of Immune Cells: Cell Isolation and cDNA Library Generation for scRNA-Seq.
    Arsenio J
    Methods Mol Biol; 2020; 2184():1-18. PubMed ID: 32808214
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Hydrop enables droplet-based single-cell ATAC-seq and single-cell RNA-seq using dissolvable hydrogel beads.
    De Rop FV; Ismail JN; Bravo González-Blas C; Hulselmans GJ; Flerin CC; Janssens J; Theunis K; Christiaens VM; Wouters J; Marcassa G; de Wit J; Poovathingal S; Aerts S
    Elife; 2022 Feb; 11():. PubMed ID: 35195064
    [TBL] [Abstract][Full Text] [Related]  

  • 18. BART-Seq: cost-effective massively parallelized targeted sequencing for genomics, transcriptomics, and single-cell analysis.
    Uzbas F; Opperer F; Sönmezer C; Shaposhnikov D; Sass S; Krendl C; Angerer P; Theis FJ; Mueller NS; Drukker M
    Genome Biol; 2019 Aug; 20(1):155. PubMed ID: 31387612
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Single-Cell RNA Sequencing in Yeast Using the 10× Genomics Chromium Device.
    Vermeersch L; Jariani A; Helsen J; Heineike BM; Verstrepen KJ
    Methods Mol Biol; 2022; 2477():3-20. PubMed ID: 35524108
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Quantitative assessment of single-cell RNA-sequencing methods.
    Wu AR; Neff NF; Kalisky T; Dalerba P; Treutlein B; Rothenberg ME; Mburu FM; Mantalas GL; Sim S; Clarke MF; Quake SR
    Nat Methods; 2014 Jan; 11(1):41-6. PubMed ID: 24141493
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 16.