These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.
238 related articles for article (PubMed ID: 29992453)
1. S-Leaping: An Adaptive, Accelerated Stochastic Simulation Algorithm, Bridging [Formula: see text]-Leaping and R-Leaping. Lipková J; Arampatzis G; Chatelain P; Menze B; Koumoutsakos P Bull Math Biol; 2019 Aug; 81(8):3074-3096. PubMed ID: 29992453 [TBL] [Abstract][Full Text] [Related]
2. Quasi-Monte Carlo Methods Applied to Tau-Leaping in Stochastic Biological Systems. Beentjes CHL; Baker RE Bull Math Biol; 2019 Aug; 81(8):2931-2959. PubMed ID: 29802519 [TBL] [Abstract][Full Text] [Related]
3. Stiffness detection and reduction in discrete stochastic simulation of biochemical systems. Pu Y; Watson LT; Cao Y J Chem Phys; 2011 Feb; 134(5):054105. PubMed ID: 21303090 [TBL] [Abstract][Full Text] [Related]
4. An efficient finite-difference strategy for sensitivity analysis of stochastic models of biochemical systems. Morshed M; Ingalls B; Ilie S Biosystems; 2017 Jan; 151():43-52. PubMed ID: 27914944 [TBL] [Abstract][Full Text] [Related]
5. Accuracy Analysis of Hybrid Stochastic Simulation Algorithm on Linear Chain Reaction Systems. Chen M; Wang S; Cao Y Bull Math Biol; 2019 Aug; 81(8):3024-3052. PubMed ID: 29992454 [TBL] [Abstract][Full Text] [Related]
6. Accurate stochastic simulation via the step anticipation tau-leaping (SAL) algorithm. Sehl M; Alekseyenko AV; Lange KL J Comput Biol; 2009 Sep; 16(9):1195-208. PubMed ID: 19772431 [TBL] [Abstract][Full Text] [Related]
8. Variance Reduction with Array-RQMC for Tau-Leaping Simulation of Stochastic Biological and Chemical Reaction Networks. Puchhammer F; Ben Abdellah A; L'Ecuyer P Bull Math Biol; 2021 Jul; 83(8):91. PubMed ID: 34236503 [TBL] [Abstract][Full Text] [Related]
9. Data-Driven Method for Efficient Characterization of Rare Event Probabilities in Biochemical Systems. Roh MK Bull Math Biol; 2019 Aug; 81(8):3097-3120. PubMed ID: 30225593 [TBL] [Abstract][Full Text] [Related]
10. Adaptive explicit-implicit tau-leaping method with automatic tau selection. Cao Y; Gillespie DT; Petzold LR J Chem Phys; 2007 Jun; 126(22):224101. PubMed ID: 17581038 [TBL] [Abstract][Full Text] [Related]
11. Generalizing Gillespie's Direct Method to Enable Network-Free Simulations. Suderman R; Mitra ED; Lin YT; Erickson KE; Feng S; Hlavacek WS Bull Math Biol; 2019 Aug; 81(8):2822-2848. PubMed ID: 29594824 [TBL] [Abstract][Full Text] [Related]
12. The Linear Noise Approximation for Spatially Dependent Biochemical Networks. Lötstedt P Bull Math Biol; 2019 Aug; 81(8):2873-2901. PubMed ID: 29644520 [TBL] [Abstract][Full Text] [Related]
15. Improved delay-leaping simulation algorithm for biochemical reaction systems with delays. Yi N; Zhuang G; Da L; Wang Y J Chem Phys; 2012 Apr; 136(14):144108. PubMed ID: 22502502 [TBL] [Abstract][Full Text] [Related]
16. Multiscale Stochastic Reaction-Diffusion Algorithms Combining Markov Chain Models with Stochastic Partial Differential Equations. Kang HW; Erban R Bull Math Biol; 2019 Aug; 81(8):3185-3213. PubMed ID: 31165406 [TBL] [Abstract][Full Text] [Related]
17. Time-ordered product expansions for computational stochastic system biology. Mjolsness E Phys Biol; 2013 Jun; 10(3):035009. PubMed ID: 23735739 [TBL] [Abstract][Full Text] [Related]
18. Exact Variance-Reduced Simulation of Lattice Continuous-Time Markov Chains with Applications in Reaction Networks. Maginnis PA; West M; Dullerud GE Bull Math Biol; 2019 Aug; 81(8):3159-3184. PubMed ID: 30761456 [TBL] [Abstract][Full Text] [Related]
19. StochKit2: software for discrete stochastic simulation of biochemical systems with events. Sanft KR; Wu S; Roh M; Fu J; Lim RK; Petzold LR Bioinformatics; 2011 Sep; 27(17):2457-8. PubMed ID: 21727139 [TBL] [Abstract][Full Text] [Related]
20. An accelerated algorithm for discrete stochastic simulation of reaction-diffusion systems using gradient-based diffusion and tau-leaping. Koh W; Blackwell KT J Chem Phys; 2011 Apr; 134(15):154103. PubMed ID: 21513371 [TBL] [Abstract][Full Text] [Related] [Next] [New Search]