These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

77 related articles for article (PubMed ID: 29994032)

  • 1. Hardness of Covering Alignment: Phase Transition in Post-Sequence Genomics.
    Rizzi R; Cairo M; Makinen V; Tomescu AI; Valenzuela D
    IEEE/ACM Trans Comput Biol Bioinform; 2019; 16(1):23-30. PubMed ID: 29994032
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Recombination-aware alignment of diploid individuals.
    Mäkinen V; Valenzuela D
    BMC Genomics; 2014; 15 Suppl 6(Suppl 6):S15. PubMed ID: 25572943
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Multiple genome alignment based on longest path in directed acyclic graphs.
    Ma F; Deogun JS
    Int J Bioinform Res Appl; 2010; 6(4):366-83. PubMed ID: 20940124
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Indexing Graphs for Path Queries with Applications in Genome Research.
    Sirén J; Välimäki N; Mäkinen V
    IEEE/ACM Trans Comput Biol Bioinform; 2014; 11(2):375-88. PubMed ID: 26355784
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Genome alignment with graph data structures: a comparison.
    Kehr B; Trappe K; Holtgrewe M; Reinert K
    BMC Bioinformatics; 2014 Apr; 15():99. PubMed ID: 24712884
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Sequence Alignment on Directed Graphs.
    Kavya VNS; Tayal K; Srinivasan R; Sivadasan N
    J Comput Biol; 2019 Jan; 26(1):53-67. PubMed ID: 30204489
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Multiple sequence assembly from reads alignable to a common reference genome.
    Peng Q; Smith AD
    IEEE/ACM Trans Comput Biol Bioinform; 2011; 8(5):1283-95. PubMed ID: 21778524
    [TBL] [Abstract][Full Text] [Related]  

  • 8. On the Hardness of Sequence Alignment on De Bruijn Graphs.
    Gibney D; Thankachan SV; Aluru S
    J Comput Biol; 2022 Dec; 29(12):1377-1396. PubMed ID: 36450127
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Haploid to diploid alignment for variation calling assessment.
    Mäkinen V; Rahkola J
    BMC Bioinformatics; 2013; 14 Suppl 15(Suppl 15):S13. PubMed ID: 24564537
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Settling the intractability of multiple alignment.
    Elias I
    J Comput Biol; 2006 Sep; 13(7):1323-39. PubMed ID: 17037961
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Detection and correction of false segmental duplications caused by genome mis-assembly.
    Kelley DR; Salzberg SL
    Genome Biol; 2010; 11(3):R28. PubMed ID: 20219098
    [TBL] [Abstract][Full Text] [Related]  

  • 12. seq-seq-pan: building a computational pan-genome data structure on whole genome alignment.
    Jandrasits C; Dabrowski PW; Fuchs S; Renard BY
    BMC Genomics; 2018 Jan; 19(1):47. PubMed ID: 29334898
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Safety in Multi-Assembly via Paths Appearing in All Path Covers of a DAG.
    Caceres M; Mumey B; Husic E; Rizzi R; Cairo M; Sahlin K; Tomescu AI
    IEEE/ACM Trans Comput Biol Bioinform; 2022; 19(6):3673-3684. PubMed ID: 34847041
    [TBL] [Abstract][Full Text] [Related]  

  • 14. SLAM web server for comparative gene finding and alignment.
    Cawley S; Pachter L; Alexandersson M
    Nucleic Acids Res; 2003 Jul; 31(13):3507-9. PubMed ID: 12824355
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Generating consensus sequences from partial order multiple sequence alignment graphs.
    Lee C
    Bioinformatics; 2003 May; 19(8):999-1008. PubMed ID: 12761063
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Fast and accurate genomic analyses using genome graphs.
    Rakocevic G; Semenyuk V; Lee WP; Spencer J; Browning J; Johnson IJ; Arsenijevic V; Nadj J; Ghose K; Suciu MC; Ji SG; Demir G; Li L; Toptaş BÇ; Dolgoborodov A; Pollex B; Spulber I; Glotova I; Kómár P; Stachyra AL; Li Y; Popovic M; Källberg M; Jain A; Kural D
    Nat Genet; 2019 Feb; 51(2):354-362. PubMed ID: 30643257
    [TBL] [Abstract][Full Text] [Related]  

  • 17. A min-cut algorithm for the consistency problem in multiple sequence alignment.
    Corel E; Pitschi F; Morgenstern B
    Bioinformatics; 2010 Apr; 26(8):1015-21. PubMed ID: 20189940
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Explaining a Weighted DAG with Few Paths for Solving Genome-Guided Multi-Assembly.
    Tomescu AI; Gagie T; Popa A; Rizzi R; Kuosmanen A; Mäkinen V
    IEEE/ACM Trans Comput Biol Bioinform; 2015; 12(6):1345-54. PubMed ID: 26671806
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Parametric alignment of Drosophila genomes.
    Dewey CN; Huggins PM; Woods K; Sturmfels B; Pachter L
    PLoS Comput Biol; 2006 Jun; 2(6):e73. PubMed ID: 16789815
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Cactus graphs for genome comparisons.
    Paten B; Diekhans M; Earl D; John JS; Ma J; Suh B; Haussler D
    J Comput Biol; 2011 Mar; 18(3):469-81. PubMed ID: 21385048
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 4.